Wall clock time and date at job start Sun Mar 29 2020 22:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.47416 * 125.52743 * 2 1 4 4 C 1.54089 * 103.61917 * 179.91508 * 3 2 1 5 5 H 1.09005 * 110.51968 * 118.81153 * 4 3 2 6 6 C 1.52998 * 110.51667 * 241.40282 * 4 3 2 7 7 N 1.46503 * 109.46839 * 183.07000 * 6 4 3 8 8 C 1.36939 * 119.99825 * 90.00652 * 7 6 4 9 9 H 1.08002 * 119.99855 * 217.64392 * 8 7 6 10 10 C 1.38813 * 120.00462 * 37.64156 * 8 7 6 11 11 N 1.31621 * 119.99822 * 20.99122 * 10 8 7 12 12 Si 1.86802 * 120.00258 * 200.99749 * 10 8 7 13 13 H 1.48506 * 109.46988 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46879 * 119.99685 * 12 10 8 15 15 H 1.48491 * 109.47072 * 239.99701 * 12 10 8 16 16 C 1.46500 * 120.00171 * 269.72547 * 7 6 4 17 17 C 1.53000 * 117.49840 * 190.77581 * 16 7 6 18 18 C 1.52999 * 117.49775 * 122.11790 * 16 7 6 19 19 O 1.45697 * 104.13375 * 0.10777 * 4 3 2 20 20 C 1.33767 * 109.47887 * 359.92970 * 19 4 3 21 21 O 1.21510 * 123.07428 * 180.02562 * 20 19 4 22 22 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47089 * 299.94765 * 1 2 3 24 24 H 1.08996 * 109.47269 * 59.94681 * 1 2 3 25 25 H 1.08996 * 110.60788 * 61.40471 * 3 2 1 26 26 H 1.09000 * 110.66695 * 298.45359 * 3 2 1 27 27 H 1.08996 * 109.47047 * 63.07451 * 6 4 3 28 28 H 1.09001 * 109.47763 * 303.07230 * 6 4 3 29 29 H 0.96995 * 119.99780 * 174.92413 * 11 10 8 30 30 H 1.08996 * 115.55311 * 336.44745 * 16 7 6 31 31 H 1.08995 * 117.50157 * 0.02562 * 17 16 7 32 32 H 1.09005 * 117.49685 * 145.02230 * 17 16 7 33 33 H 1.09003 * 117.50054 * 214.97996 * 18 16 7 34 34 H 1.09001 * 117.50159 * 359.97409 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3217 1.1997 0.0000 4 6 3.7513 0.6248 0.0022 5 1 4.2904 0.9379 -0.8919 6 6 4.5032 1.0621 1.2609 7 7 5.8801 0.5649 1.2046 8 6 6.8610 1.3289 0.6307 9 1 7.6373 0.8597 0.0445 10 6 6.8576 2.7064 0.8023 11 7 6.2028 3.2423 1.8104 12 14 7.7822 3.7994 -0.3977 13 1 8.4308 2.9577 -1.4352 14 1 6.8314 4.7380 -1.0458 15 1 8.8188 4.5712 0.3335 16 6 6.2088 -0.7470 1.7679 17 6 7.6898 -1.1043 1.9087 18 6 6.8381 -1.7803 0.8313 19 8 3.5542 -0.8188 0.0006 20 6 2.2443 -1.0902 -0.0006 21 8 1.8016 -2.2217 -0.0017 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5130 0.8905 24 1 -0.3633 0.5146 -0.8895 25 1 2.1472 1.7957 0.8958 26 1 2.1498 1.7952 -0.8967 27 1 4.0056 0.6552 2.1411 28 1 4.5120 2.1505 1.3192 29 1 6.2604 4.1967 1.9735 30 1 5.5275 -1.1129 2.5360 31 1 8.4196 -0.3633 1.5827 32 1 7.9827 -1.7057 2.7693 33 1 6.5711 -2.8261 0.9835 34 1 7.0071 -1.4842 -0.2040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496829596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:42 Heat of formation + Delta-G solvation = -16.074759 kcal Electronic energy + Delta-G solvation = -17964.567387 eV Core-core repulsion = 15092.815980 eV Total energy + Delta-G solvation = -2871.751407 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02245 -37.27881 -36.49905 -35.06617 -33.63608 -31.32777 -29.51099 -27.26834 -25.33565 -23.72722 -21.79236 -21.28338 -20.51447 -19.88592 -17.05184 -16.83496 -16.36294 -15.81945 -15.41794 -14.66155 -14.38479 -13.93393 -13.82158 -13.57395 -13.10412 -12.93177 -12.31482 -12.15238 -11.85626 -11.52659 -11.24124 -10.91124 -10.73715 -10.59440 -10.52987 -10.21000 -10.08451 -9.96094 -9.57994 -9.22318 -8.71042 -8.57538 -6.60394 -5.98471 -3.53742 2.86407 3.14940 3.23149 3.33694 3.37213 4.04283 4.29531 4.62304 4.91913 4.98787 5.09681 5.27313 5.30876 5.46105 5.54563 5.65420 5.80508 5.98766 6.02538 6.16977 6.21844 6.33391 6.58153 6.60180 6.66034 6.72201 7.05290 7.20921 7.21206 7.71273 7.84153 8.35896 8.41475 9.00617 9.62360 10.21548 11.03316 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.008760 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.920488 B = 3195.656662 C = 4015.644998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.641 5.641 3 C 0.072 3.928 4 C 0.049 3.951 5 H 0.111 0.889 6 C 0.147 3.853 7 N -0.546 5.546 8 C -0.260 4.260 9 H 0.066 0.934 10 C 0.014 3.986 11 N -0.891 5.891 12 Si 0.900 3.100 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.288 1.288 16 C 0.132 3.868 17 C -0.197 4.197 18 C -0.216 4.216 19 O -0.309 6.309 20 C 0.638 3.362 21 O -0.545 6.545 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.120 0.880 29 H 0.259 0.741 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 -0.692 -2.404 8.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.390 5.390 3 C -0.052 4.052 4 C -0.009 4.009 5 H 0.129 0.871 6 C 0.020 3.980 7 N -0.262 5.262 8 C -0.390 4.390 9 H 0.084 0.916 10 C -0.187 4.187 11 N -0.533 5.533 12 Si 0.729 3.271 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.214 1.214 16 C 0.023 3.977 17 C -0.236 4.236 18 C -0.257 4.257 19 O -0.218 6.218 20 C 0.394 3.606 21 O -0.433 6.433 22 H 0.102 0.898 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.137 0.863 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.018 -1.204 -2.372 8.448 hybrid contribution 0.460 0.830 -0.624 1.136 sum -7.558 -0.374 -2.996 8.139 Atomic orbital electron populations 1.21384 0.76043 1.03712 1.01371 1.48046 1.07081 1.06619 1.77278 1.22961 0.89791 0.88602 1.03807 1.25205 0.94285 0.75126 1.06297 0.87118 1.21363 0.83687 1.02629 0.90340 1.43267 1.03222 1.14475 1.65219 1.19065 1.07113 0.87900 1.24879 0.91627 1.25249 0.98730 0.98053 0.96627 1.69865 1.44526 1.11927 1.27024 0.86266 0.79329 0.80470 0.81058 1.19925 1.21235 1.21424 1.21051 0.92983 0.87531 0.96108 1.23110 0.96814 1.03566 1.00116 1.23278 1.08122 0.97537 0.96715 1.87420 1.21190 1.27464 1.85699 1.18751 0.81007 0.85148 0.75730 1.90952 1.74540 1.20918 1.56865 0.89778 0.91987 0.92135 0.89072 0.89835 0.94333 0.86266 0.93121 0.89775 0.88369 0.90829 0.90870 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.28 11.23 59.85 0.67 1.95 16 2 N -0.64 -9.72 3.37 -186.51 -0.63 -10.35 16 3 C 0.07 1.02 7.36 -2.97 -0.02 1.00 16 4 C 0.05 0.89 4.10 -26.16 -0.11 0.78 16 5 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 6 C 0.15 3.11 4.88 -4.04 -0.02 3.09 16 7 N -0.55 -12.91 2.77 -165.66 -0.46 -13.37 16 8 C -0.26 -6.60 8.13 -15.06 -0.12 -6.72 16 9 H 0.07 1.71 7.26 -52.49 -0.38 1.33 16 10 C 0.01 0.34 4.96 -17.43 -0.09 0.26 16 11 N -0.89 -23.32 11.44 55.49 0.64 -22.68 16 12 Si 0.90 19.99 29.61 -169.99 -5.03 14.96 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.13 2.91 6.45 -67.93 -0.44 2.47 16 17 C -0.20 -4.05 9.79 -26.69 -0.26 -4.31 16 18 C -0.22 -4.41 10.21 -26.70 -0.27 -4.68 16 19 O -0.31 -6.33 10.64 -37.82 -0.40 -6.73 16 20 C 0.64 12.41 8.85 53.71 0.48 12.89 16 21 O -0.55 -12.06 17.31 -19.12 -0.33 -12.39 16 22 H 0.08 0.98 7.53 -51.93 -0.39 0.59 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 1.18 7.73 -51.93 -0.40 0.78 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.80 8.04 -51.93 -0.42 0.39 16 28 H 0.12 2.71 5.50 -51.93 -0.29 2.42 16 29 H 0.26 6.52 8.32 -40.82 -0.34 6.18 16 30 H 0.08 1.80 8.11 -51.93 -0.42 1.38 16 31 H 0.10 2.17 6.82 -51.93 -0.35 1.81 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 LS Contribution 288.73 15.07 4.35 4.35 Total: -1.00 -29.80 288.73 -6.80 -36.60 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.75 Total: 2.90 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.18 Total: 6.72 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.45 Total: -46.40 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.73 Total: -19.12 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.80 -6.80 -36.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496829596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.525 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds