Wall clock time and date at job start Sun Mar 29 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.47416 * 125.52743 * 2 1 4 4 C 1.54089 * 103.61917 * 179.91508 * 3 2 1 5 5 H 1.09005 * 110.51968 * 118.81153 * 4 3 2 6 6 C 1.52998 * 110.51667 * 241.40282 * 4 3 2 7 7 N 1.46503 * 109.46839 * 183.07000 * 6 4 3 8 8 C 1.36939 * 119.99825 * 90.00652 * 7 6 4 9 9 H 1.08002 * 119.99855 * 217.64392 * 8 7 6 10 10 C 1.38813 * 120.00462 * 37.64156 * 8 7 6 11 11 N 1.31621 * 119.99822 * 20.99122 * 10 8 7 12 12 Si 1.86802 * 120.00258 * 200.99749 * 10 8 7 13 13 H 1.48506 * 109.46988 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46879 * 119.99685 * 12 10 8 15 15 H 1.48491 * 109.47072 * 239.99701 * 12 10 8 16 16 C 1.46500 * 120.00171 * 269.72547 * 7 6 4 17 17 C 1.53000 * 117.49840 * 190.77581 * 16 7 6 18 18 C 1.52999 * 117.49775 * 122.11790 * 16 7 6 19 19 O 1.45697 * 104.13375 * 0.10777 * 4 3 2 20 20 C 1.33767 * 109.47887 * 359.92970 * 19 4 3 21 21 O 1.21510 * 123.07428 * 180.02562 * 20 19 4 22 22 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47089 * 299.94765 * 1 2 3 24 24 H 1.08996 * 109.47269 * 59.94681 * 1 2 3 25 25 H 1.08996 * 110.60788 * 61.40471 * 3 2 1 26 26 H 1.09000 * 110.66695 * 298.45359 * 3 2 1 27 27 H 1.08996 * 109.47047 * 63.07451 * 6 4 3 28 28 H 1.09001 * 109.47763 * 303.07230 * 6 4 3 29 29 H 0.96995 * 119.99780 * 174.92413 * 11 10 8 30 30 H 1.08996 * 115.55311 * 336.44745 * 16 7 6 31 31 H 1.08995 * 117.50157 * 0.02562 * 17 16 7 32 32 H 1.09005 * 117.49685 * 145.02230 * 17 16 7 33 33 H 1.09003 * 117.50054 * 214.97996 * 18 16 7 34 34 H 1.09001 * 117.50159 * 359.97409 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3217 1.1997 0.0000 4 6 3.7513 0.6248 0.0022 5 1 4.2904 0.9379 -0.8919 6 6 4.5032 1.0621 1.2609 7 7 5.8801 0.5649 1.2046 8 6 6.8610 1.3289 0.6307 9 1 7.6373 0.8597 0.0445 10 6 6.8576 2.7064 0.8023 11 7 6.2028 3.2423 1.8104 12 14 7.7822 3.7994 -0.3977 13 1 8.4308 2.9577 -1.4352 14 1 6.8314 4.7380 -1.0458 15 1 8.8188 4.5712 0.3335 16 6 6.2088 -0.7470 1.7679 17 6 7.6898 -1.1043 1.9087 18 6 6.8381 -1.7803 0.8313 19 8 3.5542 -0.8188 0.0006 20 6 2.2443 -1.0902 -0.0006 21 8 1.8016 -2.2217 -0.0017 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5130 0.8905 24 1 -0.3633 0.5146 -0.8895 25 1 2.1472 1.7957 0.8958 26 1 2.1498 1.7952 -0.8967 27 1 4.0056 0.6552 2.1411 28 1 4.5120 2.1505 1.3192 29 1 6.2604 4.1967 1.9735 30 1 5.5275 -1.1129 2.5360 31 1 8.4196 -0.3633 1.5827 32 1 7.9827 -1.7057 2.7693 33 1 6.5711 -2.8261 0.9835 34 1 7.0071 -1.4842 -0.2040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496829596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:41 Heat of formation + Delta-G solvation = -34.342100 kcal Electronic energy + Delta-G solvation = -17965.359518 eV Core-core repulsion = 15092.815980 eV Total energy + Delta-G solvation = -2872.543538 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.44668 -38.94526 -38.11121 -36.34997 -35.40808 -33.08121 -31.01436 -28.50270 -26.95766 -25.33154 -23.29446 -22.95011 -21.90591 -21.67250 -18.60542 -18.31419 -17.86162 -17.36532 -17.10562 -16.31063 -15.99123 -15.52971 -15.09143 -14.96287 -14.60079 -14.50065 -13.59487 -13.36169 -13.27222 -13.04009 -13.01575 -12.69393 -12.39978 -12.28201 -12.20386 -11.88112 -11.72854 -11.64686 -11.28950 -10.92187 -10.46196 -9.89139 -8.45715 -7.87990 -5.47809 1.46435 1.52569 1.61328 1.63455 1.68418 2.48092 2.64016 3.12664 3.19048 3.45894 3.66171 3.81793 3.97932 4.28137 4.37220 4.47907 4.51223 4.55649 4.63859 4.75751 4.84784 4.94162 4.95126 4.99229 5.10452 5.33575 5.43112 5.50248 5.52585 5.72374 6.42231 6.45787 6.99078 7.12238 7.77455 8.33970 9.10465 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.008760 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.920488 B = 3195.656662 C = 4015.644998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.629 5.629 3 C 0.082 3.918 4 C 0.052 3.948 5 H 0.104 0.896 6 C 0.152 3.848 7 N -0.563 5.563 8 C -0.267 4.267 9 H 0.052 0.948 10 C -0.022 4.022 11 N -0.914 5.914 12 Si 0.957 3.043 13 H -0.276 1.276 14 H -0.278 1.278 15 H -0.292 1.292 16 C 0.109 3.891 17 C -0.189 4.189 18 C -0.202 4.202 19 O -0.333 6.333 20 C 0.630 3.370 21 O -0.582 6.582 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.034 0.966 28 H 0.106 0.894 29 H 0.259 0.741 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.922 0.089 -2.887 9.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.377 5.377 3 C -0.041 4.041 4 C -0.005 4.005 5 H 0.122 0.878 6 C 0.025 3.975 7 N -0.279 5.279 8 C -0.396 4.396 9 H 0.069 0.931 10 C -0.220 4.220 11 N -0.557 5.557 12 Si 0.785 3.215 13 H -0.201 1.201 14 H -0.204 1.204 15 H -0.219 1.219 16 C 0.001 3.999 17 C -0.228 4.228 18 C -0.243 4.243 19 O -0.242 6.242 20 C 0.385 3.615 21 O -0.473 6.473 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.109 0.891 25 H 0.126 0.874 26 H 0.136 0.864 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.036 -0.402 -2.860 9.486 hybrid contribution 0.759 0.563 -0.438 1.041 sum -8.277 0.160 -3.298 8.912 Atomic orbital electron populations 1.21742 0.73308 1.03974 1.04101 1.48216 1.08486 1.05516 1.75514 1.23033 0.86637 0.88068 1.06361 1.24984 0.96739 0.74596 1.04214 0.87794 1.21273 0.83006 1.01620 0.91598 1.43452 1.03946 1.14869 1.65661 1.19075 1.07387 0.88420 1.24761 0.93053 1.25779 0.99720 0.98775 0.97736 1.69963 1.45591 1.12045 1.28126 0.85392 0.78187 0.78792 0.79135 1.20099 1.20379 1.21947 1.21233 0.94042 0.87578 0.97080 1.23098 0.95468 1.03238 1.00972 1.23191 1.07318 0.98082 0.95678 1.87371 1.22412 1.28631 1.85830 1.18929 0.80960 0.85672 0.75960 1.90911 1.74966 1.22580 1.58815 0.90794 0.89491 0.89110 0.87362 0.86404 0.94757 0.87625 0.93162 0.89432 0.90271 0.88207 0.88988 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.04 11.23 127.77 1.43 3.47 16 2 N -0.63 -17.59 3.37 -975.70 -3.29 -20.88 16 3 C 0.08 2.08 7.36 86.57 0.64 2.72 16 4 C 0.05 1.86 4.10 30.96 0.13 1.98 16 5 H 0.10 3.82 8.14 -2.38 -0.02 3.80 16 6 C 0.15 6.38 4.88 86.38 0.42 6.80 16 7 N -0.56 -26.77 2.77 -678.04 -1.88 -28.65 16 8 C -0.27 -13.62 8.13 84.03 0.68 -12.94 16 9 H 0.05 2.73 7.26 -2.91 -0.02 2.71 16 10 C -0.02 -1.11 4.96 84.86 0.42 -0.69 16 11 N -0.91 -47.67 11.44 21.65 0.25 -47.42 16 12 Si 0.96 40.88 29.61 68.60 2.03 42.91 16 13 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 16 C 0.11 4.80 6.45 44.99 0.29 5.09 16 17 C -0.19 -7.67 9.79 30.62 0.30 -7.37 16 18 C -0.20 -8.18 10.21 30.62 0.31 -7.86 16 19 O -0.33 -13.60 10.64 -47.27 -0.50 -14.10 16 20 C 0.63 24.04 8.85 129.91 1.15 25.19 16 21 O -0.58 -25.79 17.31 19.65 0.34 -25.45 16 22 H 0.07 1.59 7.53 -2.39 -0.02 1.57 16 23 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 25 H 0.11 2.46 7.73 -2.39 -0.02 2.44 16 26 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16 28 H 0.11 4.78 5.50 -2.39 -0.01 4.77 16 29 H 0.26 12.96 8.32 -92.71 -0.77 12.19 16 30 H 0.09 3.74 8.11 -2.39 -0.02 3.73 16 31 H 0.08 3.52 6.82 -2.39 -0.02 3.50 16 32 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 33 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -64.21 288.73 3.81 -60.40 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.09 Total: 16.79 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 5.78 Total: 16.41 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -4.92 Total: -96.96 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.16 Total: -39.55 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -64.21 3.81 -60.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496829596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.058 kcal (2) G-P(sol) polarization free energy of solvation -64.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds