Wall clock time and date at job start Sun Mar 29 2020 22:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39902 * 112.85019 * 2 1 4 4 C 1.53782 * 113.61643 * 228.80315 * 2 1 3 5 5 C 1.53785 * 87.08001 * 220.01708 * 4 2 1 6 6 N 1.46906 * 113.61289 * 139.98092 * 5 4 2 7 7 C 1.46901 * 110.99793 * 155.00052 * 6 5 4 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 5 9 9 H 1.08990 * 109.47170 * 54.99770 * 8 7 6 10 10 C 1.47196 * 109.47160 * 294.99517 * 8 7 6 11 11 N 6.43388 * 108.46775 * 159.44415 * 2 1 3 12 12 C 1.53002 * 109.46776 * 174.99873 * 8 7 6 13 13 C 1.50701 * 109.46807 * 184.99822 * 12 8 7 14 14 H 1.07998 * 120.00496 * 359.97438 * 13 12 8 15 15 C 1.37879 * 119.99849 * 180.02562 * 13 12 8 16 16 N 1.31514 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00049 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46944 * 59.99994 * 17 15 13 19 19 H 1.48494 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47091 * 300.00102 * 17 15 13 21 21 C 1.53777 * 87.08190 * 25.43156 * 5 4 2 22 22 H 1.09000 * 109.47019 * 191.20039 * 1 2 3 23 23 H 1.08999 * 109.46951 * 311.19360 * 1 2 3 24 24 H 1.08993 * 109.47429 * 71.19878 * 1 2 3 25 25 H 1.09000 * 113.61773 * 105.47150 * 4 2 1 26 26 H 1.09000 * 113.61228 * 334.56432 * 4 2 1 27 27 H 1.09002 * 113.61509 * 270.79863 * 5 4 2 28 28 H 1.00898 * 110.99995 * 278.95130 * 6 5 4 29 29 H 1.09002 * 109.47401 * 59.99808 * 7 6 5 30 30 H 1.09001 * 109.46874 * 299.99821 * 7 6 5 31 31 H 1.08993 * 109.47416 * 304.99509 * 12 8 7 32 32 H 1.09001 * 109.46966 * 65.00241 * 12 8 7 33 33 H 0.97010 * 119.99808 * 180.02562 * 16 15 13 34 34 H 1.08997 * 113.61874 * 89.11725 * 21 5 4 35 35 H 1.09004 * 113.61556 * 220.01568 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0732 1.2892 0.0000 4 6 2.1460 -0.9281 -1.0602 5 6 3.1924 -1.3135 -0.0012 6 7 3.5321 -2.7428 -0.0025 7 6 4.8751 -2.9651 0.5496 8 6 5.1926 -4.4617 0.5312 9 1 5.0695 -4.8468 -0.4810 10 6 4.2759 -5.1690 1.4401 11 7 3.5680 -5.7140 2.1427 12 6 6.6357 -4.6825 0.9889 13 6 6.9878 -6.1416 0.8542 14 1 6.2554 -6.8415 0.4800 15 6 8.2446 -6.5832 1.2097 16 7 9.1360 -5.7311 1.6669 17 14 8.6808 -8.3920 1.0434 18 1 8.5434 -8.8058 -0.3762 19 1 10.0815 -8.6062 1.4876 20 1 7.7644 -9.2016 1.8860 21 6 2.1461 -0.9300 1.0585 22 1 -0.3633 -1.0081 0.1996 23 1 -0.3633 0.6768 0.7733 24 1 -0.3634 0.3312 -0.9727 25 1 2.5651 -0.3971 -1.9149 26 1 1.4945 -1.7523 -1.3506 27 1 4.0718 -0.6695 -0.0015 28 1 2.8410 -3.2791 0.5003 29 1 4.9116 -2.5982 1.5754 30 1 5.6090 -2.4309 -0.0538 31 1 7.3081 -4.0880 0.3705 32 1 6.7368 -4.3791 2.0310 33 1 10.0204 -6.0418 1.9167 34 1 1.4946 -1.7547 1.3474 35 1 2.5650 -0.4006 1.9143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566122061.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:29 Heat of formation + Delta-G solvation = -21.165843 kcal Electronic energy + Delta-G solvation = -16595.186255 eV Core-core repulsion = 13735.586872 eV Total energy + Delta-G solvation = -2859.599383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.82868 -38.99126 -36.87935 -34.45181 -33.24315 -31.33254 -29.27075 -26.33808 -26.08521 -23.13819 -22.04559 -21.48396 -19.82032 -16.75151 -16.57378 -16.11133 -16.04236 -15.48497 -15.19327 -14.63122 -14.27456 -13.50780 -13.37039 -13.00629 -12.93596 -12.85037 -12.50731 -12.40096 -12.15167 -11.99808 -11.69156 -11.41629 -11.28811 -11.03891 -10.75869 -10.64752 -10.38673 -10.34282 -10.27460 -9.54034 -9.24920 -8.46360 -8.35094 -6.10447 -4.13862 3.30660 3.34950 3.38346 3.52649 3.57916 3.97625 4.04074 4.14982 4.37820 4.40594 4.57125 4.72129 4.80013 5.11608 5.27457 5.32203 5.34460 5.45876 5.50903 5.52941 5.68351 5.69999 5.80583 5.88202 6.10909 6.15385 6.37055 6.52050 7.05666 7.36586 7.42372 7.51340 7.84162 8.21714 8.36291 8.90423 9.51661 11.00377 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.050668 B = 0.004175 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.479566 B = 6704.614985 C = 6974.709516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.086 3.914 3 F -0.194 7.194 4 C -0.142 4.142 5 C 0.071 3.929 6 N -0.678 5.678 7 C 0.066 3.934 8 C 0.006 3.994 9 H 0.111 0.889 10 C 0.241 3.759 11 N -0.477 5.477 12 C 0.032 3.968 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.186 4.186 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.341 0.659 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.098 0.902 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 11.804 -4.842 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 F -0.175 7.175 4 C -0.180 4.180 5 C -0.040 4.040 6 N -0.308 5.308 7 C -0.064 4.064 8 C -0.016 4.016 9 H 0.129 0.871 10 C -0.075 4.075 11 N -0.154 5.154 12 C -0.006 4.006 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.226 4.226 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.160 0.840 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.759 11.008 -4.369 18.154 hybrid contribution 0.544 -0.594 0.714 1.076 sum -13.216 10.413 -3.655 17.218 Atomic orbital electron populations 1.22115 0.92806 1.03557 1.03183 1.21677 0.93496 0.78572 0.99503 1.92838 1.87456 1.39922 1.97274 1.23724 0.98293 0.98634 0.97397 1.22996 0.96516 0.90166 0.94365 1.60500 1.04572 1.06381 1.59337 1.22148 0.90142 0.95661 0.98444 1.19345 0.94851 0.90883 0.96521 0.87079 1.29360 0.92092 0.92817 0.93277 1.81061 1.13188 1.09927 1.11231 1.19162 0.85968 0.97938 0.97558 1.21108 0.98117 0.93169 1.44212 0.92548 1.24952 0.96402 0.97722 0.94853 1.69930 1.05351 1.34349 1.43390 0.86649 0.77419 0.85292 0.78691 1.19994 1.21179 1.20269 1.24392 0.99784 0.99972 0.98416 0.90452 0.91573 0.91349 0.90088 0.87947 0.87776 0.84032 0.94525 0.88918 0.94165 0.95750 0.92720 0.88314 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.57 37.16 0.36 -0.86 16 2 C 0.09 0.83 2.13 -89.81 -0.19 0.64 16 3 F -0.19 -2.32 17.25 2.25 0.04 -2.28 16 4 C -0.14 -1.36 7.33 -25.92 -0.19 -1.55 16 5 C 0.07 0.77 4.16 -66.90 -0.28 0.49 16 6 N -0.68 -8.56 6.62 -105.86 -0.70 -9.26 16 7 C 0.07 0.95 4.96 -3.82 -0.02 0.93 16 8 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 9 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 10 C 0.24 4.78 12.98 -20.74 -0.27 4.51 16 11 N -0.48 -10.20 18.54 42.18 0.78 -9.41 16 12 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 13 C -0.53 -14.00 8.60 -34.44 -0.30 -14.29 16 14 H 0.06 1.48 7.59 -52.49 -0.40 1.09 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.19 -1.86 7.14 -25.92 -0.19 -2.04 16 22 H 0.08 0.51 7.94 -51.93 -0.41 0.10 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 27 H 0.10 1.17 7.87 -51.93 -0.41 0.76 16 28 H 0.34 4.37 7.27 -39.29 -0.29 4.09 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.10 0.92 7.64 -51.93 -0.40 0.52 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -29.26 303.72 -6.37 -35.63 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.26 Total: -0.70 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -1.52 Total: -10.03 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.82 Total: -43.42 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.26 -6.37 -35.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566122061.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.462 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds