Wall clock time and date at job start Sun Mar 29 2020 22:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48510 * 109.46787 * 239.99617 * 3 2 1 5 5 H 1.48500 * 109.47483 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47205 * 119.99763 * 3 2 1 7 7 C 1.37875 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00468 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99801 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99745 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46755 * 174.75887 * 11 10 9 13 13 N 1.46904 * 115.55077 * 36.13501 * 12 11 10 14 14 C 1.47012 * 110.99586 * 189.47528 * 13 12 11 15 15 C 1.53102 * 109.25332 * 177.60746 * 14 13 12 16 16 O 1.43016 * 109.25808 * 56.85032 * 15 14 13 17 17 C 1.43019 * 113.73866 * 301.32941 * 16 15 14 18 18 C 1.47008 * 110.99785 * 65.84104 * 13 12 11 19 19 C 1.53004 * 117.49747 * 250.46903 * 12 11 10 20 20 C 1.52996 * 117.49663 * 181.80784 * 12 11 10 21 21 H 0.97001 * 119.99797 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47387 * 59.99886 * 9 7 2 23 23 H 1.09004 * 109.47524 * 299.99688 * 9 7 2 24 24 H 1.00900 * 111.00154 * 56.04991 * 10 9 7 25 25 H 1.08994 * 109.46820 * 54.76577 * 11 10 9 26 26 H 1.08994 * 109.47282 * 294.75778 * 11 10 9 27 27 H 1.09000 * 109.50994 * 297.54240 * 14 13 12 28 28 H 1.08999 * 109.51254 * 57.67747 * 14 13 12 29 29 H 1.08997 * 109.51119 * 296.91440 * 15 14 13 30 30 H 1.09006 * 109.54216 * 176.79977 * 15 14 13 31 31 H 1.08995 * 109.50280 * 298.73670 * 17 16 15 32 32 H 1.08996 * 109.54310 * 178.62562 * 17 16 15 33 33 H 1.08995 * 109.50859 * 302.32570 * 18 13 12 34 34 H 1.09010 * 109.50786 * 62.41385 * 18 13 12 35 35 H 1.09002 * 117.49806 * 359.97438 * 19 12 11 36 36 H 1.09001 * 117.49886 * 145.01940 * 19 12 11 37 37 H 1.09008 * 117.49812 * 214.97601 * 20 12 11 38 38 H 1.08994 * 117.49966 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5052 -4.9070 0.0011 12 6 2.5248 -6.0402 -0.1306 13 7 3.8035 -5.8255 0.5600 14 6 4.7826 -6.8572 0.1883 15 6 6.1151 -6.5621 0.8822 16 8 5.9067 -6.4975 2.2956 17 6 4.9591 -5.5027 2.6931 18 6 3.6150 -5.7871 2.0174 19 6 2.5561 -6.8123 -1.4512 20 6 1.9866 -7.4711 -0.1922 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8405 -3.5487 0.7819 25 1 0.8106 -4.9440 -0.8380 26 1 0.9540 -5.0210 0.9345 27 1 4.4177 -7.8353 0.5019 28 1 4.9258 -6.8508 -0.8922 29 1 6.5065 -5.6084 0.5281 30 1 6.8278 -7.3550 0.6553 31 1 5.3169 -4.5183 2.3916 32 1 4.8351 -5.5292 3.7756 33 1 2.9059 -4.9996 2.2721 34 1 3.2307 -6.7479 2.3603 35 1 1.8500 -6.5132 -2.2259 36 1 3.5254 -7.1613 -1.8073 37 1 2.5816 -8.2533 0.2794 38 1 0.9063 -7.6052 -0.1384 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568502585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:46 Heat of formation + Delta-G solvation = -4.939582 kcal Electronic energy + Delta-G solvation = -17893.231154 eV Core-core repulsion = 15157.795699 eV Total energy + Delta-G solvation = -2735.435454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.10028 -37.72982 -34.70544 -33.30675 -32.27322 -31.09592 -27.75836 -26.59464 -24.55673 -23.70646 -22.27975 -21.30891 -20.91169 -19.07029 -16.78782 -16.35489 -16.05693 -15.23385 -15.15740 -14.91280 -14.59135 -14.24816 -14.20703 -13.76457 -12.89370 -12.77345 -12.30996 -11.98725 -11.93459 -11.47261 -11.32958 -11.24690 -11.01184 -10.87332 -10.71223 -10.52454 -10.37658 -9.96693 -9.82147 -9.53768 -9.15127 -8.43854 -8.06496 -7.14582 -5.99720 -4.01097 3.36060 3.39587 3.43154 3.62580 3.85111 3.97381 4.45945 4.75544 4.83226 4.88861 4.99940 5.05675 5.14497 5.26879 5.33835 5.36145 5.51539 5.61091 5.68511 5.69209 5.76006 5.82262 5.94382 6.01091 6.02016 6.16656 6.18159 6.24980 7.02369 7.13253 7.15287 7.30422 7.47047 7.84142 8.18252 8.51642 8.71283 9.09096 9.63714 11.11474 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.006030 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.054032 B = 4641.977965 C = 5311.313038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.674 5.674 11 C 0.106 3.894 12 C 0.067 3.933 13 N -0.482 5.482 14 C 0.012 3.988 15 C 0.064 3.936 16 O -0.390 6.390 17 C 0.063 3.937 18 C 0.020 3.980 19 C -0.166 4.166 20 C -0.222 4.222 21 H 0.261 0.739 22 H 0.026 0.974 23 H -0.018 1.018 24 H 0.335 0.665 25 H 0.071 0.929 26 H 0.018 0.982 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 -14.966 2.136 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.306 5.306 11 C -0.025 4.025 12 C -0.024 4.024 13 N -0.205 5.205 14 C -0.116 4.116 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.014 4.014 18 C -0.108 4.108 19 C -0.203 4.203 20 C -0.262 4.262 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.000 1.000 24 H 0.153 0.847 25 H 0.089 0.911 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.875 -14.456 1.449 16.526 hybrid contribution -0.545 0.204 0.853 1.033 sum 7.330 -14.252 2.302 16.191 Atomic orbital electron populations 1.69957 1.06079 1.26807 1.51112 1.24987 0.94861 0.99319 0.95441 0.86550 0.79411 0.82705 0.78653 1.20168 1.21400 1.20291 1.21153 0.93520 0.90192 1.50052 0.91969 1.19570 0.90678 0.87670 0.95496 1.60479 1.20321 1.00034 1.49747 1.21301 0.92695 0.89197 0.99330 1.21925 0.90952 0.91014 0.98507 1.61954 1.07361 1.45429 1.05760 1.22928 0.93596 0.93614 1.01500 1.22659 0.95606 1.02128 0.80878 1.87939 1.62184 1.58055 1.22663 1.22699 0.87460 0.92102 0.99116 1.22755 0.98632 1.01423 0.87995 1.23261 1.02586 1.02976 0.91492 1.23543 1.01369 0.97952 1.03384 0.92933 0.95609 0.99976 0.84730 0.91079 0.96422 0.94137 0.89231 0.91929 0.88820 0.91628 0.88549 0.89365 0.94256 0.88170 0.88649 0.89270 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.12 5.43 -4.97 -0.03 5.09 16 10 N -0.67 -14.77 6.32 -115.05 -0.73 -15.50 16 11 C 0.11 1.91 5.17 -3.82 -0.02 1.89 16 12 C 0.07 1.00 2.16 -131.60 -0.28 0.72 16 13 N -0.48 -6.97 4.11 -218.66 -0.90 -7.87 16 14 C 0.01 0.14 4.69 -3.71 -0.02 0.12 16 15 C 0.06 0.74 7.01 37.21 0.26 1.00 16 16 O -0.39 -5.15 10.83 -35.23 -0.38 -5.53 16 17 C 0.06 0.79 7.01 37.21 0.26 1.05 16 18 C 0.02 0.27 5.18 -3.72 -0.02 0.25 16 19 C -0.17 -2.17 9.40 -26.69 -0.25 -2.42 16 20 C -0.22 -2.78 9.64 -26.69 -0.26 -3.04 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H -0.02 -0.49 8.14 -51.93 -0.42 -0.91 16 24 H 0.33 7.15 6.83 -39.29 -0.27 6.88 16 25 H 0.07 1.31 7.90 -51.93 -0.41 0.90 16 26 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 27 H 0.04 0.48 6.51 -51.93 -0.34 0.14 16 28 H 0.09 1.03 6.13 -51.93 -0.32 0.71 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.29 6.61 -51.93 -0.34 0.94 16 34 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.10 1.31 8.06 -51.93 -0.42 0.89 16 36 H 0.10 1.13 5.92 -51.93 -0.31 0.82 16 37 H 0.09 1.05 6.63 -51.92 -0.34 0.71 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -30.73 299.81 -8.64 -39.37 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.10 Total: 3.32 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.77 Total: -8.83 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.89 Total: -49.77 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.38 Total: -5.53 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.73 -8.64 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568502585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.433 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds