Wall clock time and date at job start Sun Mar 29 2020 22:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48510 * 109.46787 * 239.99617 * 3 2 1 5 5 H 1.48500 * 109.47483 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47205 * 119.99763 * 3 2 1 7 7 C 1.37875 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00468 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99801 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99745 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46755 * 174.75887 * 11 10 9 13 13 N 1.46904 * 115.55077 * 36.13501 * 12 11 10 14 14 C 1.47012 * 110.99586 * 189.47528 * 13 12 11 15 15 C 1.53102 * 109.25332 * 177.60746 * 14 13 12 16 16 O 1.43016 * 109.25808 * 56.85032 * 15 14 13 17 17 C 1.43019 * 113.73866 * 301.32941 * 16 15 14 18 18 C 1.47008 * 110.99785 * 65.84104 * 13 12 11 19 19 C 1.53004 * 117.49747 * 250.46903 * 12 11 10 20 20 C 1.52996 * 117.49663 * 181.80784 * 12 11 10 21 21 H 0.97001 * 119.99797 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47387 * 59.99886 * 9 7 2 23 23 H 1.09004 * 109.47524 * 299.99688 * 9 7 2 24 24 H 1.00900 * 111.00154 * 56.04991 * 10 9 7 25 25 H 1.08994 * 109.46820 * 54.76577 * 11 10 9 26 26 H 1.08994 * 109.47282 * 294.75778 * 11 10 9 27 27 H 1.09000 * 109.50994 * 297.54240 * 14 13 12 28 28 H 1.08999 * 109.51254 * 57.67747 * 14 13 12 29 29 H 1.08997 * 109.51119 * 296.91440 * 15 14 13 30 30 H 1.09006 * 109.54216 * 176.79977 * 15 14 13 31 31 H 1.08995 * 109.50280 * 298.73670 * 17 16 15 32 32 H 1.08996 * 109.54310 * 178.62562 * 17 16 15 33 33 H 1.08995 * 109.50859 * 302.32570 * 18 13 12 34 34 H 1.09010 * 109.50786 * 62.41385 * 18 13 12 35 35 H 1.09002 * 117.49806 * 359.97438 * 19 12 11 36 36 H 1.09001 * 117.49886 * 145.01940 * 19 12 11 37 37 H 1.09008 * 117.49812 * 214.97601 * 20 12 11 38 38 H 1.08994 * 117.49966 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5052 -4.9070 0.0011 12 6 2.5248 -6.0402 -0.1306 13 7 3.8035 -5.8255 0.5600 14 6 4.7826 -6.8572 0.1883 15 6 6.1151 -6.5621 0.8822 16 8 5.9067 -6.4975 2.2956 17 6 4.9591 -5.5027 2.6931 18 6 3.6150 -5.7871 2.0174 19 6 2.5561 -6.8123 -1.4512 20 6 1.9866 -7.4711 -0.1922 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8405 -3.5487 0.7819 25 1 0.8106 -4.9440 -0.8380 26 1 0.9540 -5.0210 0.9345 27 1 4.4177 -7.8353 0.5019 28 1 4.9258 -6.8508 -0.8922 29 1 6.5065 -5.6084 0.5281 30 1 6.8278 -7.3550 0.6553 31 1 5.3169 -4.5183 2.3916 32 1 4.8351 -5.5292 3.7756 33 1 2.9059 -4.9996 2.2721 34 1 3.2307 -6.7479 2.3603 35 1 1.8500 -6.5132 -2.2259 36 1 3.5254 -7.1613 -1.8073 37 1 2.5816 -8.2533 0.2794 38 1 0.9063 -7.6052 -0.1384 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568502585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:46 Heat of formation + Delta-G solvation = -27.505599 kcal Electronic energy + Delta-G solvation = -17894.209690 eV Core-core repulsion = 15157.795699 eV Total energy + Delta-G solvation = -2736.413990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16098 -38.81076 -36.54159 -34.45238 -34.25120 -32.11747 -29.57638 -27.75582 -26.20738 -24.84189 -23.39727 -23.22836 -21.98104 -20.21077 -18.59968 -17.67894 -17.13274 -16.82145 -16.39601 -16.15368 -15.92511 -15.69241 -15.42554 -14.85466 -14.62017 -14.43852 -13.66323 -13.50725 -13.24882 -12.99828 -12.74085 -12.63516 -12.56870 -12.27617 -12.14391 -12.01180 -11.65697 -11.41047 -11.29392 -11.05021 -10.64541 -10.56202 -9.12227 -8.99937 -8.21414 -6.32392 1.41406 1.45201 1.53200 2.40543 2.57033 2.84692 2.96691 3.11651 3.50855 3.75228 3.87854 3.93689 4.03288 4.17251 4.19151 4.29747 4.33016 4.53336 4.63095 4.65930 4.69557 4.72906 4.74578 4.81881 4.94634 5.02905 5.06319 5.12112 5.18313 5.27670 5.62548 6.00845 6.01257 6.09405 6.17825 6.51935 6.77527 6.94379 7.38695 8.90015 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.006030 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.054032 B = 4641.977965 C = 5311.313038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.671 5.671 11 C 0.107 3.893 12 C 0.045 3.955 13 N -0.500 5.500 14 C 0.014 3.986 15 C 0.062 3.938 16 O -0.399 6.399 17 C 0.066 3.934 18 C 0.023 3.977 19 C -0.161 4.161 20 C -0.199 4.199 21 H 0.265 0.735 22 H -0.002 1.002 23 H -0.043 1.043 24 H 0.338 0.662 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.121 0.879 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -15.713 2.085 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.302 5.302 11 C -0.023 4.023 12 C -0.046 4.046 13 N -0.223 5.223 14 C -0.113 4.113 15 C -0.014 4.014 16 O -0.318 6.318 17 C -0.011 4.011 18 C -0.105 4.105 19 C -0.198 4.198 20 C -0.239 4.239 21 H 0.074 0.926 22 H 0.016 0.984 23 H -0.026 1.026 24 H 0.157 0.843 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.421 -15.233 1.398 17.965 hybrid contribution -1.055 0.379 0.858 1.411 sum 8.367 -14.853 2.256 17.196 Atomic orbital electron populations 1.70087 1.07794 1.28028 1.51595 1.25945 0.95778 1.03333 0.94586 0.85393 0.78121 0.77656 0.79164 1.19401 1.20710 1.19061 1.21488 0.93715 0.91404 1.50524 0.91931 1.19219 0.90671 0.89217 0.92882 1.60369 1.19516 1.00444 1.49888 1.21297 0.93617 0.88597 0.98802 1.21683 0.91067 0.91027 1.00815 1.61908 1.07452 1.46936 1.05989 1.22978 0.93113 0.93170 1.02042 1.22818 0.95832 1.02802 0.79981 1.87930 1.62154 1.58037 1.23693 1.22713 0.86747 0.91524 1.00111 1.22701 0.98855 1.00934 0.87975 1.23355 1.03444 1.01965 0.91005 1.23538 1.01843 0.96164 1.02320 0.92630 0.98403 1.02572 0.84338 0.91851 0.96735 0.93391 0.88449 0.92708 0.86084 0.92683 0.86729 0.91187 0.93809 0.88488 0.86988 0.87846 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -31.14 9.32 25.60 0.24 -30.90 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.48 5.43 85.56 0.46 11.94 16 10 N -0.67 -30.08 6.32 -517.92 -3.27 -33.35 16 11 C 0.11 3.95 5.17 86.30 0.45 4.40 16 12 C 0.05 1.30 2.16 3.53 0.01 1.31 16 13 N -0.50 -13.86 4.11 -845.70 -3.47 -17.33 16 14 C 0.01 0.32 4.69 86.32 0.41 0.72 16 15 C 0.06 1.29 7.01 72.02 0.50 1.80 16 16 O -0.40 -9.79 10.83 -148.98 -1.61 -11.41 16 17 C 0.07 1.58 7.01 72.01 0.50 2.08 16 18 C 0.02 0.62 5.18 86.31 0.45 1.06 16 19 C -0.16 -3.88 9.40 30.62 0.29 -3.60 16 20 C -0.20 -4.52 9.64 30.62 0.30 -4.23 16 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 22 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 23 H -0.04 -2.56 8.14 -2.38 -0.02 -2.58 16 24 H 0.34 14.76 6.83 -89.69 -0.61 14.15 16 25 H 0.06 2.39 7.90 -2.39 -0.02 2.37 16 26 H 0.01 0.54 8.09 -2.39 -0.02 0.52 16 27 H 0.05 0.99 6.51 -2.39 -0.02 0.97 16 28 H 0.10 1.96 6.13 -2.39 -0.01 1.95 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.07 6.61 -2.39 -0.02 2.06 16 34 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.10 2.41 8.06 -2.39 -0.02 2.39 16 36 H 0.11 2.33 5.92 -2.39 -0.01 2.32 16 37 H 0.10 2.10 6.63 -2.38 -0.02 2.09 16 38 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -65.75 299.81 -1.56 -67.31 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.43 Total: 19.70 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.06 Total: -14.86 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -6.46 Total: -107.66 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.61 Total: -11.41 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.75 -1.56 -67.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568502585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.800 kcal (2) G-P(sol) polarization free energy of solvation -65.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds