Wall clock time and date at job start Sun Mar 29 2020 22:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.31065 * 126.66312 * 269.68958 * 4 3 2 6 6 N 1.28842 * 107.99551 * 179.89539 * 5 4 3 7 7 N 1.28737 * 109.39412 * 0.37316 * 6 5 4 8 8 N 1.29023 * 108.81110 * 359.76722 * 7 6 5 9 9 C 1.46494 * 126.44202 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47580 * 270.03093 * 9 8 7 11 11 O 1.42892 * 109.47338 * 179.97438 * 10 9 8 12 12 C 1.42908 * 114.00054 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47205 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00190 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00184 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00435 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47363 * 59.99520 * 17 15 13 19 19 H 1.48499 * 109.47494 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46803 * 299.99773 * 17 15 13 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08998 * 109.46909 * 30.02989 * 9 8 7 29 29 H 1.09000 * 109.47104 * 150.02874 * 9 8 7 30 30 H 1.09007 * 109.47012 * 300.00008 * 10 9 8 31 31 H 1.09000 * 109.47368 * 59.99302 * 10 9 8 32 32 H 1.09004 * 109.46763 * 300.00071 * 12 11 10 33 33 H 1.09000 * 109.47159 * 59.99426 * 12 11 10 34 34 H 0.97001 * 120.00547 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3300 1.4482 1.0504 6 7 5.5504 1.4439 0.6375 7 7 5.5662 1.4436 -0.6498 8 7 4.3501 1.4427 -1.0808 9 6 3.9236 1.4427 -2.4822 10 6 3.7747 2.8851 -2.9702 11 8 3.3593 2.8850 -4.3374 12 6 3.1903 4.1905 -4.8937 13 6 2.7529 4.0714 -6.3308 14 1 2.6179 3.0963 -6.7752 15 6 2.5262 5.2072 -7.0788 16 7 2.6911 6.3946 -6.5380 17 14 1.9847 5.0597 -8.8605 18 1 0.6969 4.3232 -8.9271 19 1 1.8090 6.4162 -9.4385 20 1 3.0171 4.3222 -9.6321 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 4.6693 0.9290 -3.0889 29 1 2.9665 0.9286 -2.5707 30 1 3.0289 3.3988 -2.3635 31 1 4.7318 3.3993 -2.8817 32 1 2.4323 4.7315 -4.3272 33 1 4.1354 4.7314 -4.8447 34 1 2.5312 7.1937 -7.0640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577890556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:48 Heat of formation + Delta-G solvation = 48.741752 kcal Electronic energy + Delta-G solvation = -16758.072298 eV Core-core repulsion = 13921.424297 eV Total energy + Delta-G solvation = -2836.648001 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.19592 -37.50946 -36.03617 -35.34971 -32.90761 -32.23580 -30.23400 -27.78420 -27.14945 -24.30257 -23.32965 -22.50804 -22.15586 -21.29912 -17.55604 -17.11887 -16.44664 -15.84660 -15.63685 -15.39365 -15.10033 -14.49529 -13.84677 -13.69574 -13.63172 -12.88493 -12.60304 -12.42174 -12.18856 -11.93062 -11.68287 -11.40731 -11.38774 -11.15819 -11.05683 -11.01078 -10.87298 -10.69846 -10.22977 -9.98614 -9.33719 -9.11830 -8.42375 -6.25161 -4.28880 1.19707 1.89843 2.21048 3.23404 3.27178 3.29983 3.78130 4.12495 4.21151 4.45471 4.53659 4.62483 4.83479 4.96674 5.11125 5.11642 5.23091 5.27996 5.34478 5.40301 5.45988 5.53696 5.70861 5.78530 5.81589 5.86230 5.97091 6.17060 6.83197 7.19045 7.60255 7.92943 8.24804 8.60249 8.81273 9.36521 10.86058 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028758 B = 0.004629 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.393594 B = 6047.670723 C = 6670.930008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.044 4.044 4 C 0.189 3.811 5 N -0.308 5.308 6 N -0.082 5.082 7 N -0.091 5.091 8 N -0.297 5.297 9 C 0.113 3.887 10 C 0.052 3.948 11 O -0.389 6.389 12 C 0.198 3.802 13 C -0.522 4.522 14 H 0.068 0.932 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.911 3.089 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.009 0.991 33 H 0.010 0.990 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 -10.567 10.666 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.084 4.084 4 C -0.089 4.089 5 N -0.158 5.158 6 N -0.075 5.075 7 N -0.077 5.077 8 N -0.100 5.100 9 C -0.009 4.009 10 C -0.028 4.028 11 O -0.308 6.308 12 C 0.124 3.876 13 C -0.560 4.560 14 H 0.086 0.914 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.738 3.262 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.617 -10.513 11.142 15.541 hybrid contribution -0.884 0.435 -1.386 1.701 sum -3.501 -10.078 9.756 14.457 Atomic orbital electron populations 1.21759 0.94300 1.02333 1.02565 1.21517 0.96895 0.94406 1.03001 1.20367 0.82241 0.99820 1.05988 1.26123 0.98584 1.01610 0.82621 1.74972 0.96881 1.19410 1.24492 1.78589 1.12964 1.15222 1.00759 1.78915 1.02556 1.18105 1.08093 1.48488 1.04350 1.46835 1.10353 1.22121 1.03875 1.00782 0.74077 1.22369 0.99893 0.92726 0.87770 1.87812 1.88429 1.33819 1.20716 1.20318 0.95703 0.77739 0.93840 1.20951 1.46637 0.93563 0.94823 0.91376 1.24953 0.95243 0.94776 0.99343 1.69943 1.48580 0.97598 1.37343 0.86344 0.79312 0.77261 0.83285 1.19909 1.21045 1.19895 0.92199 0.91975 0.92165 0.90989 0.91668 0.88494 0.87429 0.86098 0.86370 0.93452 0.92960 0.97297 0.97265 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.91 5.92 -26.73 -0.16 -1.06 16 3 C -0.04 -0.39 5.36 -27.89 -0.15 -0.54 16 4 C 0.19 2.41 7.39 -155.43 -1.15 1.26 16 5 N -0.31 -4.74 12.36 32.70 0.40 -4.34 16 6 N -0.08 -1.38 13.43 60.35 0.81 -0.57 16 7 N -0.09 -1.47 13.29 60.35 0.80 -0.66 16 8 N -0.30 -4.07 3.35 -58.28 -0.20 -4.26 16 9 C 0.11 1.40 6.43 -4.05 -0.03 1.37 16 10 C 0.05 0.84 6.26 37.16 0.23 1.07 16 11 O -0.39 -8.26 10.33 -35.23 -0.36 -8.62 16 12 C 0.20 5.05 5.69 36.00 0.20 5.25 16 13 C -0.52 -14.46 9.43 -34.44 -0.32 -14.79 16 14 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 17 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 21 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.79 7.81 -51.93 -0.41 0.39 16 27 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.12 1.17 7.74 -51.93 -0.40 0.76 16 30 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -31.37 299.98 -4.41 -35.77 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -5.00 Total: -6.10 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.10 Total: -6.51 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 2.56 Total: -34.88 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.36 Total: -8.62 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.37 -4.41 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577890556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.517 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds