Wall clock time and date at job start Sun Mar 29 2020 22:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.31065 * 126.66312 * 269.68958 * 4 3 2 6 6 N 1.28842 * 107.99551 * 179.89539 * 5 4 3 7 7 N 1.28737 * 109.39412 * 0.37316 * 6 5 4 8 8 N 1.29023 * 108.81110 * 359.76722 * 7 6 5 9 9 C 1.46494 * 126.44202 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47580 * 270.03093 * 9 8 7 11 11 O 1.42892 * 109.47338 * 179.97438 * 10 9 8 12 12 C 1.42908 * 114.00054 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47205 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00190 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00184 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00435 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47363 * 59.99520 * 17 15 13 19 19 H 1.48499 * 109.47494 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46803 * 299.99773 * 17 15 13 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08998 * 109.46909 * 30.02989 * 9 8 7 29 29 H 1.09000 * 109.47104 * 150.02874 * 9 8 7 30 30 H 1.09007 * 109.47012 * 300.00008 * 10 9 8 31 31 H 1.09000 * 109.47368 * 59.99302 * 10 9 8 32 32 H 1.09004 * 109.46763 * 300.00071 * 12 11 10 33 33 H 1.09000 * 109.47159 * 59.99426 * 12 11 10 34 34 H 0.97001 * 120.00547 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3300 1.4482 1.0504 6 7 5.5504 1.4439 0.6375 7 7 5.5662 1.4436 -0.6498 8 7 4.3501 1.4427 -1.0808 9 6 3.9236 1.4427 -2.4822 10 6 3.7747 2.8851 -2.9702 11 8 3.3593 2.8850 -4.3374 12 6 3.1903 4.1905 -4.8937 13 6 2.7529 4.0714 -6.3308 14 1 2.6179 3.0963 -6.7752 15 6 2.5262 5.2072 -7.0788 16 7 2.6911 6.3946 -6.5380 17 14 1.9847 5.0597 -8.8605 18 1 0.6969 4.3232 -8.9271 19 1 1.8090 6.4162 -9.4385 20 1 3.0171 4.3222 -9.6321 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 4.6693 0.9290 -3.0889 29 1 2.9665 0.9286 -2.5707 30 1 3.0289 3.3988 -2.3635 31 1 4.7318 3.3993 -2.8817 32 1 2.4323 4.7315 -4.3272 33 1 4.1354 4.7314 -4.8447 34 1 2.5312 7.1937 -7.0640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577890556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:47 Heat of formation + Delta-G solvation = 28.071717 kcal Electronic energy + Delta-G solvation = -16758.968618 eV Core-core repulsion = 13921.424297 eV Total energy + Delta-G solvation = -2837.544321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.33565 -39.05931 -37.10215 -36.33712 -34.93996 -33.23690 -31.55286 -29.24140 -28.41075 -25.63160 -24.53141 -24.32545 -23.10322 -22.15305 -18.81414 -18.69293 -18.00947 -17.20563 -17.08015 -16.44501 -16.28891 -16.03454 -15.33517 -14.90774 -14.36624 -14.15746 -14.05214 -13.60275 -13.06068 -13.00135 -12.96496 -12.88314 -12.74929 -12.49892 -12.27758 -12.24337 -12.19879 -11.84134 -11.62878 -11.37290 -11.06736 -10.95381 -10.39124 -8.33956 -6.46925 0.08363 0.81691 1.05478 1.43020 1.46460 1.55083 2.33666 2.81245 3.01308 3.04297 3.18087 3.60694 3.78753 3.98323 4.06202 4.08045 4.13542 4.27277 4.45195 4.51043 4.66658 4.73137 4.74906 4.79045 4.92728 5.07003 5.10123 5.23858 5.26372 5.47201 5.51863 5.89102 6.36053 6.72268 7.24810 7.43898 8.77872 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028758 B = 0.004629 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.393594 B = 6047.670723 C = 6670.930008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.044 4.044 4 C 0.203 3.797 5 N -0.329 5.329 6 N -0.104 5.104 7 N -0.110 5.110 8 N -0.298 5.298 9 C 0.122 3.878 10 C 0.048 3.952 11 O -0.392 6.392 12 C 0.210 3.790 13 C -0.549 4.549 14 H 0.070 0.930 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.983 3.017 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.266 1.266 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.152 0.848 30 H 0.058 0.942 31 H 0.038 0.962 32 H -0.005 1.005 33 H -0.014 1.014 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -11.571 9.934 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.084 4.084 4 C -0.075 4.075 5 N -0.179 5.179 6 N -0.097 5.097 7 N -0.096 5.096 8 N -0.101 5.101 9 C 0.002 3.998 10 C -0.031 4.031 11 O -0.311 6.311 12 C 0.135 3.865 13 C -0.587 4.587 14 H 0.088 0.912 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.805 3.195 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.191 1.191 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.148 0.852 29 H 0.170 0.830 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.013 0.987 33 H 0.003 0.997 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.072 -11.537 10.432 16.078 hybrid contribution -0.434 0.742 -1.064 1.368 sum -4.506 -10.795 9.368 14.986 Atomic orbital electron populations 1.21745 0.93172 1.02868 1.02924 1.21496 0.97717 0.93228 1.02925 1.20657 0.79401 1.01125 1.07249 1.26812 0.99822 0.99191 0.81651 1.74929 0.96802 1.20540 1.25639 1.78564 1.13956 1.16054 1.01174 1.78868 1.03887 1.18838 1.08008 1.48535 1.03908 1.46795 1.10828 1.22127 1.05954 0.98213 0.73512 1.22529 0.99356 0.95656 0.85509 1.87743 1.88596 1.31307 1.23445 1.19922 0.93875 0.79157 0.93518 1.21341 1.47286 0.93944 0.96087 0.91227 1.25941 0.94812 0.94197 1.04120 1.70058 1.49234 0.98445 1.39271 0.85235 0.79330 0.77587 0.77314 1.18624 1.20459 1.19091 0.91622 0.91859 0.91584 0.91503 0.91409 0.87263 0.86129 0.85235 0.82991 0.92361 0.94347 0.98675 0.99662 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.11 -1.46 5.92 30.59 0.18 -1.28 16 3 C -0.04 -0.67 5.36 29.85 0.16 -0.51 16 4 C 0.20 4.87 7.39 138.13 1.02 5.90 16 5 N -0.33 -9.92 12.36 -50.45 -0.62 -10.55 16 6 N -0.10 -3.50 13.43 37.01 0.50 -3.00 16 7 N -0.11 -3.50 13.29 37.02 0.49 -3.01 16 8 N -0.30 -7.75 3.35 -338.28 -1.13 -8.89 16 9 C 0.12 2.80 6.43 86.38 0.56 3.35 16 10 C 0.05 1.52 6.26 71.98 0.45 1.97 16 11 O -0.39 -16.44 10.33 -148.98 -1.54 -17.98 16 12 C 0.21 10.86 5.69 71.23 0.41 11.26 16 13 C -0.55 -30.39 9.43 25.60 0.24 -30.14 16 14 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 15 C 0.01 0.45 5.46 84.66 0.46 0.91 16 16 N -0.93 -53.75 13.29 21.45 0.28 -53.47 16 17 Si 0.98 41.92 29.54 68.60 2.03 43.94 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 19 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.11 1.45 7.81 -2.39 -0.02 1.43 16 27 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.15 2.48 7.74 -2.39 -0.02 2.46 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -67.35 299.98 5.27 -62.07 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: 1.08 Total: 0.23 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 4.19 Total: -9.36 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -0.48 Total: -78.91 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.54 Total: -17.98 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -67.35 5.27 -62.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577890556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.144 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds