Wall clock time and date at job start Sun Mar 29 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48499 * 109.47032 * 239.99881 * 3 2 1 5 5 H 1.48492 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46860 * 120.00227 * 3 2 1 7 7 C 1.37872 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99810 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46902 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46880 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47358 * 55.00486 * 11 10 9 13 13 N 1.46899 * 109.47501 * 295.00245 * 11 10 9 14 14 C 1.50700 * 109.47191 * 175.00049 * 11 10 9 15 15 O 1.21285 * 120.00417 * 100.00031 * 14 11 10 16 16 N 1.34778 * 120.00059 * 280.00124 * 14 11 10 17 17 C 1.46923 * 120.63136 * 0.02562 * 16 14 11 18 18 C 1.53195 * 108.77575 * 233.60857 * 17 16 14 19 19 C 1.53046 * 109.30793 * 305.36150 * 18 17 16 20 20 C 1.53043 * 109.53700 * 61.36640 * 19 18 17 21 21 C 1.46931 * 120.63134 * 179.97438 * 16 14 11 22 22 H 0.97003 * 119.99128 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47578 * 59.99794 * 9 7 2 24 24 H 1.09004 * 109.47013 * 299.99529 * 9 7 2 25 25 H 1.08998 * 109.47027 * 60.00180 * 10 9 7 26 26 H 1.08995 * 109.47326 * 299.99578 * 10 9 7 27 27 H 1.00900 * 111.00138 * 176.04714 * 13 11 10 28 28 H 1.00903 * 110.99440 * 299.99769 * 13 11 10 29 29 H 1.08996 * 109.59375 * 113.81919 * 17 16 14 30 30 H 1.09006 * 109.58686 * 353.38919 * 17 16 14 31 31 H 1.08990 * 109.49959 * 185.41234 * 18 17 16 32 32 H 1.08999 * 109.49609 * 65.30943 * 18 17 16 33 33 H 1.08998 * 109.45610 * 181.38442 * 19 18 17 34 34 H 1.08997 * 109.46079 * 301.34562 * 19 18 17 35 35 H 1.09000 * 109.49738 * 58.58741 * 20 19 18 36 36 H 1.09003 * 109.49316 * 178.68106 * 20 19 18 37 37 H 1.09001 * 109.58511 * 6.60429 * 21 16 14 38 38 H 1.09004 * 109.58611 * 246.18229 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 1 0.7877 -5.0073 -0.8404 13 7 0.7287 -5.1181 1.2566 14 6 2.4545 -6.1299 -0.1226 15 8 2.7867 -6.7532 0.8633 16 7 2.9570 -6.4594 -1.3291 17 6 2.5647 -5.7134 -2.5325 18 6 2.0536 -6.7049 -3.5825 19 6 3.1182 -7.7769 -3.8267 20 6 3.3816 -8.5420 -2.5277 21 6 3.9084 -7.5707 -1.4657 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8904 25 1 2.8717 -3.6044 0.8905 26 1 2.8717 -3.6044 -0.8894 27 1 0.1643 -5.9545 1.2547 28 1 1.3488 -5.1022 2.0524 29 1 3.4272 -5.1759 -2.9267 30 1 1.7739 -5.0061 -2.2824 31 1 1.8497 -6.1760 -4.5134 32 1 1.1387 -7.1759 -3.2231 33 1 2.7671 -8.4697 -4.5914 34 1 4.0406 -7.3029 -4.1624 35 1 2.4541 -8.9958 -2.1783 36 1 4.1228 -9.3206 -2.7080 37 1 4.0044 -8.0889 -0.5115 38 1 4.8802 -7.1841 -1.7731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591628567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:05 Heat of formation + Delta-G solvation = -58.338924 kcal Electronic energy + Delta-G solvation = -17762.866867 eV Core-core repulsion = 15025.115844 eV Total energy + Delta-G solvation = -2737.751024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23394 -37.50140 -35.27524 -32.91508 -32.75131 -31.19029 -30.07571 -26.76613 -25.28742 -23.69298 -22.85132 -21.00428 -20.01720 -18.82677 -17.30095 -16.32385 -15.83406 -15.54168 -14.84206 -14.65298 -14.44287 -14.17744 -14.03996 -13.73989 -13.15117 -12.89317 -12.40127 -12.29771 -11.97447 -11.59874 -11.36040 -11.13331 -10.87198 -10.83632 -10.72621 -10.63747 -10.51402 -10.00824 -9.77223 -9.34954 -9.00287 -8.60128 -8.32952 -8.17985 -5.93068 -3.95266 2.79556 3.09553 3.36540 3.41183 3.43646 4.49821 4.55404 4.65453 4.71075 4.87921 4.95491 5.05018 5.17776 5.36239 5.40216 5.42541 5.53749 5.63198 5.69000 5.75817 5.80441 5.85383 5.88925 5.93809 6.15625 6.43934 6.55350 6.68455 7.09015 7.38300 7.55758 7.76250 7.81856 7.96696 8.13962 8.31756 8.49238 9.12448 9.67861 11.17799 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030725 B = 0.005472 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.092248 B = 5115.441626 C = 5517.546887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.096 4.096 11 C 0.077 3.923 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.485 3.515 15 O -0.557 6.557 16 N -0.611 5.611 17 C 0.101 3.899 18 C -0.136 4.136 19 C -0.120 4.120 20 C -0.133 4.133 21 C 0.107 3.893 22 H 0.260 0.740 23 H 0.012 0.988 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.333 0.667 28 H 0.347 0.653 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 -15.415 -7.707 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.134 4.134 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.335 5.335 14 C 0.273 3.727 15 O -0.436 6.436 16 N -0.345 5.345 17 C -0.022 4.022 18 C -0.174 4.174 19 C -0.157 4.157 20 C -0.171 4.171 21 C -0.016 4.016 22 H 0.070 0.930 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.161 0.839 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.459 -14.918 -7.368 17.226 hybrid contribution 1.095 0.006 -0.038 1.095 sum 5.553 -14.912 -7.406 17.551 Atomic orbital electron populations 1.69968 1.05947 1.26512 1.50771 1.24980 0.94792 0.99005 0.95458 0.86715 0.79617 0.83449 0.78527 1.20375 1.21326 1.20330 1.21240 0.92853 0.91328 1.50705 0.93063 1.19009 0.93524 0.89793 0.98170 1.21677 0.98886 0.92141 1.00731 1.21866 0.93626 0.93440 0.94897 0.88413 1.59025 1.26937 1.44215 1.03306 1.22740 0.82083 0.85743 0.82168 1.90622 1.61532 1.54623 1.36804 1.48234 1.45241 1.33296 1.07687 1.21895 1.01300 0.94118 0.84859 1.21937 0.98868 0.97369 0.99258 1.21521 0.99303 0.97810 0.97109 1.21913 1.01739 0.97916 0.95551 1.21567 0.91803 0.88048 1.00180 0.93049 0.96928 0.94666 0.92876 0.92776 0.85532 0.83866 0.91009 0.88419 0.90435 0.91529 0.91835 0.91721 0.91711 0.91038 0.89342 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 10 C -0.10 -1.97 4.54 -26.73 -0.12 -2.09 16 11 C 0.08 1.34 2.30 -68.87 -0.16 1.18 16 12 H 0.10 1.60 6.54 -51.93 -0.34 1.26 16 13 N -0.81 -14.05 8.44 -5.66 -0.05 -14.10 16 14 C 0.48 8.10 6.94 -10.98 -0.08 8.03 16 15 O -0.56 -10.74 15.66 5.55 0.09 -10.65 16 16 N -0.61 -8.39 2.97 -172.72 -0.51 -8.90 16 17 C 0.10 1.19 5.58 -3.71 -0.02 1.17 16 18 C -0.14 -1.28 6.08 -26.61 -0.16 -1.44 16 19 C -0.12 -1.01 5.88 -26.68 -0.16 -1.17 16 20 C -0.13 -1.23 6.08 -26.57 -0.16 -1.39 16 21 C 0.11 1.26 6.44 -3.67 -0.02 1.24 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 1.05 7.20 -51.93 -0.37 0.67 16 27 H 0.33 5.06 9.06 -39.29 -0.36 4.70 16 28 H 0.35 6.15 8.58 -39.29 -0.34 5.81 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.25 5.18 -51.93 -0.27 0.98 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -31.95 303.29 -7.83 -39.78 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.21 Total: 6.02 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.43 Total: -7.28 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.18 Total: -49.13 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.95 -7.83 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591628567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.563 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds