Wall clock time and date at job start Sun Mar 29 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48499 * 109.47032 * 239.99881 * 3 2 1 5 5 H 1.48492 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46860 * 120.00227 * 3 2 1 7 7 C 1.37872 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99810 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46902 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46880 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47358 * 55.00486 * 11 10 9 13 13 N 1.46899 * 109.47501 * 295.00245 * 11 10 9 14 14 C 1.50700 * 109.47191 * 175.00049 * 11 10 9 15 15 O 1.21285 * 120.00417 * 100.00031 * 14 11 10 16 16 N 1.34778 * 120.00059 * 280.00124 * 14 11 10 17 17 C 1.46923 * 120.63136 * 0.02562 * 16 14 11 18 18 C 1.53195 * 108.77575 * 233.60857 * 17 16 14 19 19 C 1.53046 * 109.30793 * 305.36150 * 18 17 16 20 20 C 1.53043 * 109.53700 * 61.36640 * 19 18 17 21 21 C 1.46931 * 120.63134 * 179.97438 * 16 14 11 22 22 H 0.97003 * 119.99128 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47578 * 59.99794 * 9 7 2 24 24 H 1.09004 * 109.47013 * 299.99529 * 9 7 2 25 25 H 1.08998 * 109.47027 * 60.00180 * 10 9 7 26 26 H 1.08995 * 109.47326 * 299.99578 * 10 9 7 27 27 H 1.00900 * 111.00138 * 176.04714 * 13 11 10 28 28 H 1.00903 * 110.99440 * 299.99769 * 13 11 10 29 29 H 1.08996 * 109.59375 * 113.81919 * 17 16 14 30 30 H 1.09006 * 109.58686 * 353.38919 * 17 16 14 31 31 H 1.08990 * 109.49959 * 185.41234 * 18 17 16 32 32 H 1.08999 * 109.49609 * 65.30943 * 18 17 16 33 33 H 1.08998 * 109.45610 * 181.38442 * 19 18 17 34 34 H 1.08997 * 109.46079 * 301.34562 * 19 18 17 35 35 H 1.09000 * 109.49738 * 58.58741 * 20 19 18 36 36 H 1.09003 * 109.49316 * 178.68106 * 20 19 18 37 37 H 1.09001 * 109.58511 * 6.60429 * 21 16 14 38 38 H 1.09004 * 109.58611 * 246.18229 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 1 0.7877 -5.0073 -0.8404 13 7 0.7287 -5.1181 1.2566 14 6 2.4545 -6.1299 -0.1226 15 8 2.7867 -6.7532 0.8633 16 7 2.9570 -6.4594 -1.3291 17 6 2.5647 -5.7134 -2.5325 18 6 2.0536 -6.7049 -3.5825 19 6 3.1182 -7.7769 -3.8267 20 6 3.3816 -8.5420 -2.5277 21 6 3.9084 -7.5707 -1.4657 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8904 25 1 2.8717 -3.6044 0.8905 26 1 2.8717 -3.6044 -0.8894 27 1 0.1643 -5.9545 1.2547 28 1 1.3488 -5.1022 2.0524 29 1 3.4272 -5.1759 -2.9267 30 1 1.7739 -5.0061 -2.2824 31 1 1.8497 -6.1760 -4.5134 32 1 1.1387 -7.1759 -3.2231 33 1 2.7671 -8.4697 -4.5914 34 1 4.0406 -7.3029 -4.1624 35 1 2.4541 -8.9958 -2.1783 36 1 4.1228 -9.3206 -2.7080 37 1 4.0044 -8.0889 -0.5115 38 1 4.8802 -7.1841 -1.7731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591628567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:05 Heat of formation + Delta-G solvation = -80.289501 kcal Electronic energy + Delta-G solvation = -17763.818716 eV Core-core repulsion = 15025.115844 eV Total energy + Delta-G solvation = -2738.702872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.45337 -38.56384 -36.88893 -34.84478 -33.83584 -32.07867 -31.93624 -28.35123 -26.65189 -25.06525 -23.95006 -22.44592 -21.35164 -19.97408 -18.65489 -18.25922 -17.13432 -16.99878 -16.43036 -15.98216 -15.55253 -15.31979 -15.16613 -14.73295 -14.45883 -14.24711 -13.97501 -13.72780 -13.47637 -13.22863 -12.77307 -12.51768 -12.33280 -12.20612 -11.89336 -11.76012 -11.68154 -11.50538 -11.50307 -11.20254 -10.97444 -10.47796 -9.69218 -9.63579 -8.12873 -6.23346 1.42363 1.45408 1.46711 1.53327 1.98131 2.45507 3.20157 3.43102 3.62663 3.84011 3.93791 3.97922 4.08941 4.12479 4.28210 4.33821 4.51581 4.59941 4.75342 4.80100 4.90192 4.91486 4.95930 5.04898 5.13603 5.19663 5.24292 5.43148 5.54839 5.57172 5.83748 5.98307 6.06244 6.29993 6.31874 6.48244 6.94477 7.04132 7.44801 8.98175 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030725 B = 0.005472 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.092248 B = 5115.441626 C = 5517.546887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.042 3.958 10 C -0.080 4.080 11 C 0.085 3.915 12 H 0.108 0.892 13 N -0.818 5.818 14 C 0.485 3.515 15 O -0.587 6.587 16 N -0.604 5.604 17 C 0.094 3.906 18 C -0.132 4.132 19 C -0.117 4.117 20 C -0.126 4.126 21 C 0.101 3.899 22 H 0.262 0.738 23 H -0.004 1.004 24 H 0.005 0.995 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.346 0.654 28 H 0.345 0.655 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 -15.762 -9.331 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.119 4.119 11 C -0.030 4.030 12 H 0.126 0.874 13 N -0.347 5.347 14 C 0.272 3.728 15 O -0.469 6.469 16 N -0.337 5.337 17 C -0.028 4.028 18 C -0.170 4.170 19 C -0.154 4.154 20 C -0.164 4.164 21 C -0.021 4.021 22 H 0.071 0.929 23 H 0.014 0.986 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.705 -15.287 -9.035 18.651 hybrid contribution 0.700 0.091 0.441 0.833 sum 6.406 -15.196 -8.593 18.596 Atomic orbital electron populations 1.70101 1.07629 1.27587 1.51614 1.25876 0.95672 1.02942 0.94891 0.85601 0.78351 0.78637 0.79034 1.18998 1.20878 1.19738 1.21681 0.93305 0.92703 1.50608 0.92706 1.18807 0.93771 0.91203 0.95784 1.21390 0.97765 0.92079 1.00637 1.21646 0.93792 0.92314 0.95268 0.87426 1.59009 1.27207 1.45192 1.03275 1.22405 0.82069 0.85479 0.82824 1.90608 1.62595 1.55648 1.38009 1.48313 1.44574 1.33477 1.07291 1.22083 1.01405 0.94657 0.84686 1.21926 0.98911 0.97203 0.98946 1.21528 0.99313 0.97660 0.96903 1.21881 1.01789 0.97744 0.95006 1.21762 0.92097 0.87853 1.00358 0.92904 0.98606 0.97681 0.94161 0.91535 0.84139 0.84192 0.90008 0.89757 0.88726 0.92087 0.90058 0.90850 0.92667 0.88860 0.91196 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 9 C 0.04 2.17 4.86 29.85 0.15 2.32 16 10 C -0.08 -3.32 4.54 30.59 0.14 -3.18 16 11 C 0.09 2.98 2.30 44.17 0.10 3.08 16 12 H 0.11 3.53 6.54 -2.39 -0.02 3.51 16 13 N -0.82 -29.01 8.44 -171.81 -1.45 -30.46 16 14 C 0.48 16.10 6.94 87.66 0.61 16.71 16 15 O -0.59 -22.75 15.66 -3.04 -0.05 -22.80 16 16 N -0.60 -15.92 2.97 -818.74 -2.43 -18.35 16 17 C 0.09 2.06 5.58 86.36 0.48 2.54 16 18 C -0.13 -2.15 6.08 30.67 0.19 -1.96 16 19 C -0.12 -1.58 5.88 30.62 0.18 -1.39 16 20 C -0.13 -2.01 6.08 30.70 0.19 -1.83 16 21 C 0.10 2.24 6.44 86.39 0.56 2.79 16 22 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 25 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 2.55 7.20 -2.39 -0.02 2.54 16 27 H 0.35 10.60 9.06 -89.69 -0.81 9.78 16 28 H 0.34 12.51 8.58 -89.69 -0.77 11.75 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 2.08 5.18 -2.38 -0.01 2.07 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.82 7.00 -2.39 -0.02 1.81 16 38 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -68.61 303.29 1.13 -67.48 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.53 Total: 25.10 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 3.28 Total: -11.01 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.60 Total: -105.12 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.61 1.13 -67.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591628567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.813 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds