Wall clock time and date at job start Sun Mar 29 2020 22:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 115.56388 * 2 1 4 4 C 1.53000 * 117.49845 * 214.30530 * 2 1 3 5 5 C 1.52996 * 60.00049 * 252.51506 * 4 2 1 6 6 C 1.53005 * 117.50010 * 252.48413 * 5 4 2 7 7 N 1.46502 * 117.49952 * 107.49331 * 5 4 2 8 8 C 1.34771 * 120.00075 * 65.25403 * 7 5 4 9 9 O 1.21587 * 120.00437 * 354.98030 * 8 7 5 10 10 N 1.34773 * 120.00075 * 174.97759 * 8 7 5 11 11 C 1.46507 * 120.00385 * 179.73052 * 10 8 7 12 12 C 1.52998 * 109.47294 * 180.27657 * 11 10 8 13 13 C 1.50694 * 109.46924 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00544 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00073 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99892 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00216 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47240 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47117 * 120.00153 * 17 15 13 20 20 H 1.48496 * 109.46960 * 239.99683 * 17 15 13 21 21 H 1.09000 * 109.47547 * 274.31586 * 1 2 3 22 22 H 1.09002 * 109.46817 * 34.31486 * 1 2 3 23 23 H 1.08998 * 109.47535 * 154.30847 * 1 2 3 24 24 H 1.09006 * 109.47084 * 205.68741 * 3 2 1 25 25 H 1.08997 * 109.47114 * 325.68508 * 3 2 1 26 26 H 1.09002 * 109.47309 * 85.68805 * 3 2 1 27 27 H 1.09004 * 117.49844 * 145.02021 * 4 2 1 28 28 H 1.08995 * 117.51788 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.46961 * 268.61399 * 6 5 4 30 30 H 1.09006 * 109.46794 * 28.61384 * 6 5 4 31 31 H 1.08991 * 109.47054 * 148.60736 * 6 5 4 32 32 H 0.96999 * 119.99980 * 245.25867 * 7 5 4 33 33 H 0.97001 * 120.00251 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.46673 * 300.27311 * 11 10 8 35 35 H 1.09001 * 109.47092 * 60.26899 * 11 10 8 36 36 H 1.09000 * 109.46978 * 299.99467 * 12 11 10 37 37 H 1.09002 * 109.47315 * 59.99189 * 12 11 10 38 38 H 0.97003 * 120.00168 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2363 -1.1210 0.7651 6 6 3.5490 -0.7765 1.4716 7 7 1.3959 -2.1122 1.4415 8 6 1.6721 -3.4256 1.3194 9 8 2.5611 -3.7935 0.5760 10 7 0.9628 -4.3315 2.0214 11 6 1.2590 -5.7597 1.8842 12 6 0.3125 -6.5649 2.7769 13 6 0.6168 -8.0340 2.6352 14 1 1.4060 -8.3608 1.9743 15 6 -0.1123 -8.9610 3.3494 16 7 -1.0730 -8.5631 4.1546 17 14 0.2654 -10.7821 3.1744 18 1 1.3834 -10.9658 2.2144 19 1 0.6514 -11.3369 4.4967 20 1 -0.9389 -11.4913 2.6726 21 1 -0.3634 0.0773 1.0247 22 1 -0.3633 0.8488 -0.5794 23 1 -0.3634 -0.9260 -0.4455 24 1 3.1824 1.3084 -0.4455 25 1 1.5813 2.0742 -0.5793 26 1 2.2773 1.7414 1.0248 27 1 3.1715 -0.8753 -1.2682 28 1 1.6115 -1.8590 -1.2678 29 1 4.1103 -1.6914 1.6615 30 1 4.1388 -0.1130 0.8391 31 1 3.3331 -0.2797 2.4174 32 1 0.6408 -1.8231 1.9773 33 1 0.2538 -4.0381 2.6149 34 1 1.1228 -6.0608 0.8455 35 1 2.2898 -5.9475 2.1848 36 1 0.4487 -6.2638 3.8156 37 1 -0.7182 -6.3770 2.4763 38 1 -1.5857 -9.2153 4.6573 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596555658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:59 Heat of formation + Delta-G solvation = -26.377330 kcal Electronic energy + Delta-G solvation = -17142.741416 eV Core-core repulsion = 14406.376351 eV Total energy + Delta-G solvation = -2736.365065 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.12437 -38.24412 -34.71855 -33.25147 -32.63750 -30.29821 -29.17550 -28.02024 -27.00431 -24.70718 -21.93918 -20.81632 -20.00515 -18.84844 -17.74880 -16.31939 -15.96805 -15.29171 -14.57306 -14.48159 -14.44110 -14.02671 -13.49286 -13.26154 -13.05216 -12.88748 -12.49644 -12.37029 -12.25565 -12.16982 -11.78278 -11.31281 -11.15439 -11.03738 -10.59772 -10.35247 -10.16416 -9.87111 -9.64553 -9.44089 -9.20485 -8.91164 -8.46799 -8.21249 -6.07696 -4.10084 2.96964 3.29724 3.37288 3.42923 3.57795 3.66049 4.40152 4.50468 4.58274 4.63687 4.85647 4.90333 5.29508 5.38997 5.40506 5.58084 5.63395 5.71061 5.72031 5.76184 5.79434 5.88445 5.96632 6.17996 6.21550 6.33518 6.43116 6.78439 6.83568 7.05621 7.29542 7.59922 7.65796 7.91974 8.28681 8.50804 8.95631 9.08610 9.54636 11.04044 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056464 B = 0.003921 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.775446 B = 7140.186139 C = 7311.357700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.129 4.129 3 C -0.112 4.112 4 C -0.152 4.152 5 C 0.128 3.872 6 C -0.120 4.120 7 N -0.723 5.723 8 C 0.700 3.300 9 O -0.591 6.591 10 N -0.740 5.740 11 C 0.141 3.859 12 C 0.012 3.988 13 C -0.519 4.519 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.394 0.606 33 H 0.392 0.608 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 19.608 -5.487 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.130 4.130 3 C -0.170 4.170 4 C -0.190 4.190 5 C 0.039 3.961 6 C -0.179 4.179 7 N -0.379 5.379 8 C 0.400 3.600 9 O -0.469 6.469 10 N -0.394 5.394 11 C 0.019 3.981 12 C -0.025 4.025 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.225 0.775 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.037 19.134 -6.037 20.465 hybrid contribution -0.660 -0.856 0.576 1.225 sum 3.377 18.277 -5.460 19.372 Atomic orbital electron populations 1.21293 0.91865 1.02206 1.01767 1.22024 0.95245 0.91409 1.04335 1.21359 1.00037 0.93629 1.01938 1.23486 1.02107 0.99546 0.93826 1.20414 0.92690 0.91689 0.91295 1.21497 0.94537 1.01902 0.99945 1.44430 1.33827 1.03890 1.55745 1.16062 0.82417 0.80395 0.81107 1.90883 1.34487 1.79363 1.42151 1.45549 1.38814 1.07710 1.47314 1.21568 1.00163 0.75725 1.00691 1.19329 0.94208 0.94445 0.94518 1.21098 1.18089 0.90779 1.25834 0.92169 1.25002 0.94956 0.99327 0.95072 1.69970 1.21572 1.34195 1.27651 0.86456 0.78312 0.84843 0.77960 1.19558 1.20951 1.20960 0.92337 0.92052 0.92168 0.92209 0.92044 0.92078 0.88439 0.88481 0.91469 0.91528 0.92274 0.77154 0.77514 0.92888 0.92844 0.95980 0.96015 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.14 37.15 0.34 -0.68 16 2 C -0.13 -1.26 2.70 -154.51 -0.42 -1.67 16 3 C -0.11 -0.84 8.72 37.16 0.32 -0.52 16 4 C -0.15 -1.85 8.81 -26.73 -0.24 -2.09 16 5 C 0.13 1.56 2.26 -131.82 -0.30 1.26 16 6 C -0.12 -1.36 9.36 37.16 0.35 -1.01 16 7 N -0.72 -9.80 4.92 -52.42 -0.26 -10.06 16 8 C 0.70 12.64 8.49 -86.93 -0.74 11.90 16 9 O -0.59 -12.92 15.91 5.29 0.08 -12.84 16 10 N -0.74 -13.48 5.56 -65.22 -0.36 -13.85 16 11 C 0.14 3.11 5.61 -4.04 -0.02 3.09 16 12 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 13 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 22 H 0.06 0.47 7.92 -51.93 -0.41 0.05 16 23 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 24 H 0.06 0.43 7.28 -51.93 -0.38 0.05 16 25 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 28 H 0.10 1.37 8.05 -51.93 -0.42 0.95 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.62 6.96 -51.93 -0.36 0.26 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.39 4.33 8.46 -40.82 -0.35 3.98 16 33 H 0.39 6.16 8.49 -40.82 -0.35 5.82 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -32.16 317.38 -7.71 -39.87 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.42 Total: 4.06 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.25 Total: -2.90 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.12 Total: -49.51 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.16 -7.71 -39.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596555658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.489 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds