Wall clock time and date at job start Sun Mar 29 2020 22:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 115.56388 * 2 1 4 4 C 1.53000 * 117.49845 * 214.30530 * 2 1 3 5 5 C 1.52996 * 60.00049 * 252.51506 * 4 2 1 6 6 C 1.53005 * 117.50010 * 252.48413 * 5 4 2 7 7 N 1.46502 * 117.49952 * 107.49331 * 5 4 2 8 8 C 1.34771 * 120.00075 * 65.25403 * 7 5 4 9 9 O 1.21587 * 120.00437 * 354.98030 * 8 7 5 10 10 N 1.34773 * 120.00075 * 174.97759 * 8 7 5 11 11 C 1.46507 * 120.00385 * 179.73052 * 10 8 7 12 12 C 1.52998 * 109.47294 * 180.27657 * 11 10 8 13 13 C 1.50694 * 109.46924 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00544 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00073 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99892 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00216 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47240 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47117 * 120.00153 * 17 15 13 20 20 H 1.48496 * 109.46960 * 239.99683 * 17 15 13 21 21 H 1.09000 * 109.47547 * 274.31586 * 1 2 3 22 22 H 1.09002 * 109.46817 * 34.31486 * 1 2 3 23 23 H 1.08998 * 109.47535 * 154.30847 * 1 2 3 24 24 H 1.09006 * 109.47084 * 205.68741 * 3 2 1 25 25 H 1.08997 * 109.47114 * 325.68508 * 3 2 1 26 26 H 1.09002 * 109.47309 * 85.68805 * 3 2 1 27 27 H 1.09004 * 117.49844 * 145.02021 * 4 2 1 28 28 H 1.08995 * 117.51788 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.46961 * 268.61399 * 6 5 4 30 30 H 1.09006 * 109.46794 * 28.61384 * 6 5 4 31 31 H 1.08991 * 109.47054 * 148.60736 * 6 5 4 32 32 H 0.96999 * 119.99980 * 245.25867 * 7 5 4 33 33 H 0.97001 * 120.00251 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.46673 * 300.27311 * 11 10 8 35 35 H 1.09001 * 109.47092 * 60.26899 * 11 10 8 36 36 H 1.09000 * 109.46978 * 299.99467 * 12 11 10 37 37 H 1.09002 * 109.47315 * 59.99189 * 12 11 10 38 38 H 0.97003 * 120.00168 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2363 -1.1210 0.7651 6 6 3.5490 -0.7765 1.4716 7 7 1.3959 -2.1122 1.4415 8 6 1.6721 -3.4256 1.3194 9 8 2.5611 -3.7935 0.5760 10 7 0.9628 -4.3315 2.0214 11 6 1.2590 -5.7597 1.8842 12 6 0.3125 -6.5649 2.7769 13 6 0.6168 -8.0340 2.6352 14 1 1.4060 -8.3608 1.9743 15 6 -0.1123 -8.9610 3.3494 16 7 -1.0730 -8.5631 4.1546 17 14 0.2654 -10.7821 3.1744 18 1 1.3834 -10.9658 2.2144 19 1 0.6514 -11.3369 4.4967 20 1 -0.9389 -11.4913 2.6726 21 1 -0.3634 0.0773 1.0247 22 1 -0.3633 0.8488 -0.5794 23 1 -0.3634 -0.9260 -0.4455 24 1 3.1824 1.3084 -0.4455 25 1 1.5813 2.0742 -0.5793 26 1 2.2773 1.7414 1.0248 27 1 3.1715 -0.8753 -1.2682 28 1 1.6115 -1.8590 -1.2678 29 1 4.1103 -1.6914 1.6615 30 1 4.1388 -0.1130 0.8391 31 1 3.3331 -0.2797 2.4174 32 1 0.6408 -1.8231 1.9773 33 1 0.2538 -4.0381 2.6149 34 1 1.1228 -6.0608 0.8455 35 1 2.2898 -5.9475 2.1848 36 1 0.4487 -6.2638 3.8156 37 1 -0.7182 -6.3770 2.4763 38 1 -1.5857 -9.2153 4.6573 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596555658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:59 Heat of formation + Delta-G solvation = -48.037731 kcal Electronic energy + Delta-G solvation = -17143.680682 eV Core-core repulsion = 14406.376351 eV Total energy + Delta-G solvation = -2737.304330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34542 -39.44626 -36.51289 -34.88028 -34.25852 -31.58433 -30.65812 -28.78769 -27.80511 -26.67236 -23.44621 -22.51699 -21.21880 -19.91961 -19.09620 -18.40501 -17.06653 -16.67036 -16.48516 -15.98094 -15.62407 -15.16196 -14.82604 -14.63027 -14.31263 -14.06052 -13.74196 -13.30842 -13.20822 -13.12774 -12.95317 -12.92889 -12.63547 -12.51347 -12.26268 -12.02847 -11.67110 -11.50970 -11.26692 -11.03663 -10.61210 -10.44937 -10.22418 -9.71081 -8.24556 -6.34840 1.41026 1.41700 1.54990 1.69432 2.19487 2.40957 2.67728 3.10218 3.30337 3.66659 3.75334 3.94903 4.15714 4.45067 4.50911 4.55672 4.74054 4.79111 4.83334 4.85965 4.87920 4.94047 5.06298 5.07091 5.08099 5.22568 5.30987 5.32972 5.48063 5.52090 5.58586 5.70918 5.78955 6.03942 6.16968 6.78410 7.15371 7.34609 7.64753 8.87626 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056464 B = 0.003921 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.775446 B = 7140.186139 C = 7311.357700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.096 4.096 3 C -0.112 4.112 4 C -0.172 4.172 5 C 0.102 3.898 6 C -0.116 4.116 7 N -0.705 5.705 8 C 0.699 3.301 9 O -0.631 6.631 10 N -0.735 5.735 11 C 0.162 3.838 12 C 0.024 3.976 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.409 0.591 33 H 0.406 0.594 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 21.007 -5.459 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.097 4.097 3 C -0.170 4.170 4 C -0.210 4.210 5 C 0.014 3.986 6 C -0.174 4.174 7 N -0.360 5.360 8 C 0.400 3.600 9 O -0.512 6.512 10 N -0.390 5.390 11 C 0.038 3.962 12 C -0.013 4.013 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.202 1.202 21 H 0.089 0.911 22 H 0.099 0.901 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.241 0.759 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.970 20.593 -5.992 21.812 hybrid contribution -0.668 -1.218 0.551 1.495 sum 3.302 19.375 -5.441 20.394 Atomic orbital electron populations 1.21364 0.91156 1.02165 1.02800 1.22145 0.95704 0.91597 1.00250 1.21429 1.00369 0.92013 1.03144 1.23496 1.02784 1.00942 0.93804 1.20805 0.93809 0.92747 0.91241 1.21475 0.93825 1.00938 1.01149 1.44256 1.34129 1.02425 1.55215 1.16176 0.81756 0.81604 0.80514 1.90853 1.36228 1.80335 1.43806 1.45241 1.39461 1.06406 1.47916 1.21043 0.98551 0.77564 0.99036 1.19125 0.94014 0.93994 0.94183 1.21489 1.18363 0.92445 1.26149 0.92371 1.25876 0.94635 1.04121 0.94548 1.70066 1.22345 1.35933 1.28268 0.85381 0.78370 0.78980 0.78221 1.19014 1.20142 1.20160 0.91050 0.90140 0.93931 0.91718 0.90478 0.90812 0.87696 0.91069 0.94594 0.89418 0.90671 0.75426 0.75934 0.94063 0.93993 0.97295 0.97326 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.14 71.98 0.66 -1.16 16 2 C -0.10 -1.66 2.70 -52.18 -0.14 -1.80 16 3 C -0.11 -1.29 8.72 71.98 0.63 -0.67 16 4 C -0.17 -4.14 8.81 30.59 0.27 -3.87 16 5 C 0.10 2.37 2.26 3.60 0.01 2.38 16 6 C -0.12 -2.45 9.36 71.98 0.67 -1.77 16 7 N -0.70 -18.61 4.92 -438.02 -2.15 -20.76 16 8 C 0.70 25.47 8.49 179.06 1.52 26.99 16 9 O -0.63 -28.30 15.91 -3.99 -0.06 -28.36 16 10 N -0.74 -27.04 5.56 -478.53 -2.66 -29.70 16 11 C 0.16 7.32 5.61 86.38 0.48 7.80 16 12 C 0.02 1.26 5.09 29.85 0.15 1.41 16 13 C -0.55 -31.06 9.11 25.60 0.23 -30.82 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.01 0.39 5.46 84.65 0.46 0.85 16 16 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 17 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 21 H 0.07 0.94 8.00 -2.39 -0.02 0.92 16 22 H 0.08 0.97 7.92 -2.39 -0.02 0.95 16 23 H 0.04 0.82 7.90 -2.39 -0.02 0.80 16 24 H 0.06 0.71 7.28 -2.38 -0.02 0.70 16 25 H 0.08 0.70 7.92 -2.39 -0.02 0.68 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 2.29 8.05 -2.39 -0.02 2.27 16 28 H 0.07 2.07 8.05 -2.39 -0.02 2.06 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.45 6.96 -2.38 -0.02 1.43 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.41 8.37 8.46 -92.71 -0.78 7.58 16 33 H 0.41 12.66 8.49 -92.71 -0.79 11.87 16 34 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -69.62 317.38 1.85 -67.76 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.53 Total: 20.02 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 4.95 Total: -0.65 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.53 Total: -104.89 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.06 Total: -28.36 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.62 1.85 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596555658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.724 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds