Wall clock time and date at job start Sun Mar 29 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37094 * 120.00310 * 2 1 4 4 H 1.07997 * 120.00055 * 143.80737 * 3 2 1 5 5 C 1.38955 * 120.00114 * 323.81263 * 3 2 1 6 6 N 1.31403 * 119.99968 * 156.00283 * 5 3 2 7 7 Si 1.86804 * 119.99632 * 336.00328 * 5 3 2 8 8 H 1.48496 * 109.47132 * 95.13589 * 7 5 3 9 9 H 1.48499 * 109.46870 * 215.13412 * 7 5 3 10 10 H 1.48499 * 109.47328 * 335.13455 * 7 5 3 11 11 C 1.34775 * 119.99665 * 180.02562 * 2 1 3 12 12 O 1.21297 * 120.00181 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00151 * 0.26877 * 11 2 1 14 14 C 1.52999 * 109.47217 * 179.87165 * 13 11 2 15 15 H 1.09001 * 110.21731 * 305.03697 * 14 13 11 16 16 C 1.54479 * 110.24305 * 67.05829 * 14 13 11 17 17 C 1.54631 * 101.76851 * 144.41775 * 16 14 13 18 18 C 1.51290 * 104.19078 * 335.20201 * 17 16 14 19 19 O 1.21278 * 124.93872 * 196.27927 * 18 17 16 20 20 N 1.34414 * 110.11431 * 16.24802 * 18 17 16 21 21 C 1.46503 * 124.34696 * 180.42570 * 20 18 17 22 22 H 1.09011 * 109.46965 * 266.31001 * 1 2 3 23 23 H 1.09000 * 109.47028 * 26.30082 * 1 2 3 24 24 H 1.08999 * 109.47597 * 146.30979 * 1 2 3 25 25 H 0.97009 * 119.99859 * 179.97438 * 6 5 3 26 26 H 1.08996 * 109.47151 * 299.87535 * 13 11 2 27 27 H 1.09002 * 109.46996 * 59.87703 * 13 11 2 28 28 H 1.08999 * 110.97197 * 262.53149 * 16 14 13 29 29 H 1.08999 * 110.97268 * 26.29363 * 16 14 13 30 30 H 1.08994 * 110.48775 * 216.52733 * 17 16 14 31 31 H 1.08994 * 110.60246 * 93.93204 * 17 16 14 32 32 H 1.09000 * 109.47782 * 274.54273 * 21 20 18 33 33 H 1.09007 * 109.46924 * 34.54784 * 21 20 18 34 34 H 1.09003 * 109.47126 * 154.53779 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0742 1.2774 0.5523 5 6 1.6569 2.2746 -0.7105 6 7 2.0004 3.4952 -0.3660 7 14 0.5049 2.0009 -2.1554 8 1 -0.9022 2.1175 -1.6956 9 1 0.7704 3.0221 -3.2003 10 1 0.7309 0.6457 -2.7189 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0072 14 6 2.3795 -3.6352 -0.0097 15 1 3.0724 -3.5367 -0.8453 16 6 3.1534 -3.6796 1.3265 17 6 3.3193 -5.2015 1.5445 18 6 2.1751 -5.8144 0.7673 19 8 1.7761 -6.9520 0.8997 20 7 1.6646 -4.9144 -0.0907 21 6 0.5389 -5.1766 -0.9909 22 1 -0.3633 -0.0661 1.0256 23 1 -0.3633 0.9213 -0.4553 24 1 -0.3634 -0.8550 -0.5700 25 1 1.6560 4.2543 -0.8623 26 1 0.7567 -2.5335 0.8811 27 1 0.7606 -2.5265 -0.8988 28 1 4.1232 -3.1912 1.2321 29 1 2.5695 -3.2317 2.1306 30 1 3.2358 -5.4466 2.6032 31 1 4.2755 -5.5436 1.1489 32 1 0.9066 -5.6366 -1.9081 33 1 -0.1664 -5.8502 -0.5040 34 1 0.0388 -4.2381 -1.2302 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597012296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:08 Heat of formation + Delta-G solvation = -75.680510 kcal Electronic energy + Delta-G solvation = -17658.979601 eV Core-core repulsion = 14784.643495 eV Total energy + Delta-G solvation = -2874.336106 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.65605 -40.31660 -37.76067 -36.60793 -34.14062 -33.67144 -32.02309 -28.20156 -27.53013 -27.34853 -25.39372 -22.70250 -20.61011 -20.22054 -19.01082 -18.22251 -17.62229 -17.40344 -17.04336 -16.30388 -16.10574 -15.42868 -14.83492 -14.75915 -14.61537 -14.47211 -14.18373 -13.79082 -13.64284 -13.38818 -13.23831 -13.06189 -12.75506 -12.56855 -12.25505 -11.94068 -11.89096 -11.77540 -11.02003 -10.89043 -10.33825 -9.76488 -9.67146 -8.50314 -6.09462 1.21800 1.35461 1.47127 1.51591 1.96560 1.98534 2.19704 2.77831 2.99386 3.38633 3.55638 3.76911 4.00632 4.05644 4.25925 4.36213 4.38854 4.47192 4.53575 4.58376 4.73464 4.83813 4.86863 4.87391 4.91438 5.15110 5.21801 5.49873 5.55728 6.06153 6.07788 6.57084 6.97543 7.11397 7.34489 7.90398 8.67036 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.043685 B = 0.006265 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.791848 B = 4467.909027 C = 4876.899517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.485 5.485 3 C -0.336 4.336 4 H 0.046 0.954 5 C 0.010 3.990 6 N -0.910 5.910 7 Si 0.951 3.049 8 H -0.241 1.241 9 H -0.294 1.294 10 H -0.255 1.255 11 C 0.463 3.537 12 O -0.604 6.604 13 C -0.132 4.132 14 C 0.152 3.848 15 H 0.080 0.920 16 C -0.115 4.115 17 C -0.147 4.147 18 C 0.511 3.489 19 O -0.581 6.581 20 N -0.614 5.614 21 C 0.083 3.917 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.279 0.721 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 -13.380 -1.037 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.207 5.207 3 C -0.464 4.464 4 H 0.064 0.936 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.774 3.226 8 H -0.166 1.166 9 H -0.221 1.221 10 H -0.179 1.179 11 C 0.253 3.747 12 O -0.488 6.488 13 C -0.172 4.172 14 C 0.048 3.952 15 H 0.098 0.902 16 C -0.153 4.153 17 C -0.186 4.186 18 C 0.301 3.699 19 O -0.462 6.462 20 N -0.346 5.346 21 C -0.058 4.058 22 H 0.091 0.909 23 H 0.072 0.928 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.335 -13.757 -1.051 15.182 hybrid contribution -0.053 0.723 -0.571 0.923 sum -6.388 -13.034 -1.621 14.606 Atomic orbital electron populations 1.22261 0.80257 1.02862 1.03294 1.43811 1.05994 1.04697 1.66240 1.18647 1.08691 0.87738 1.31289 0.93569 1.26160 0.99662 0.93866 0.99522 1.69902 1.46192 0.99216 1.39459 0.85827 0.79336 0.78868 0.78577 1.16601 1.22113 1.17876 1.20906 0.87985 0.85784 0.80034 1.90540 1.15913 1.87815 1.54547 1.21879 0.98955 0.90228 1.06137 1.21329 0.92639 0.81301 0.99954 0.90181 1.22558 1.02150 0.94836 0.95757 1.22393 0.98120 0.95462 1.02676 1.21329 0.84227 0.84399 0.79974 1.90670 1.66272 1.19602 1.69634 1.48381 1.33810 1.13202 1.39224 1.21803 0.87707 1.03298 0.92959 0.90854 0.92835 0.88287 0.91132 0.87041 0.86766 0.89321 0.90094 0.86709 0.86516 0.91956 0.91010 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.82 8.88 127.77 1.14 2.95 16 2 N -0.49 -21.52 2.59 -658.88 -1.71 -23.23 16 3 C -0.34 -18.82 9.37 84.04 0.79 -18.03 16 4 H 0.05 3.06 7.88 -2.91 -0.02 3.03 16 5 C 0.01 0.55 5.26 84.93 0.45 0.99 16 6 N -0.91 -52.80 13.96 21.66 0.30 -52.50 16 7 Si 0.95 39.74 25.12 68.60 1.72 41.46 16 8 H -0.24 -8.72 6.64 99.48 0.66 -8.06 16 9 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 11 C 0.46 18.81 7.41 87.66 0.65 19.46 16 12 O -0.60 -29.49 14.66 -3.08 -0.05 -29.53 16 13 C -0.13 -3.48 3.51 29.85 0.10 -3.37 16 14 C 0.15 3.91 2.95 45.44 0.13 4.04 16 15 H 0.08 2.29 7.97 -2.39 -0.02 2.27 16 16 C -0.12 -2.88 5.73 31.65 0.18 -2.70 16 17 C -0.15 -3.18 6.86 30.59 0.21 -2.97 16 18 C 0.51 13.89 8.02 87.90 0.71 14.60 16 19 O -0.58 -19.81 17.66 -3.02 -0.05 -19.86 16 20 N -0.61 -14.64 3.18 -818.88 -2.61 -17.25 16 21 C 0.08 1.54 10.72 127.77 1.37 2.91 16 22 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 23 H 0.05 1.90 3.40 -2.39 -0.01 1.90 16 24 H 0.10 2.33 6.59 -2.39 -0.02 2.32 16 25 H 0.28 14.84 8.31 -92.70 -0.77 14.07 16 26 H 0.11 2.49 8.01 -2.39 -0.02 2.47 16 27 H 0.11 2.42 5.89 -2.39 -0.01 2.40 16 28 H 0.09 2.51 7.62 -2.39 -0.02 2.49 16 29 H 0.08 1.99 7.84 -2.39 -0.02 1.97 16 30 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.36 8.03 -2.38 -0.02 1.34 16 34 H 0.10 1.36 6.25 -2.39 -0.01 1.34 16 Total: -1.00 -73.66 277.10 4.39 -69.27 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.06 Total: 13.76 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 5.72 Total: 17.88 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -4.01 Total: -92.98 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -0.10 Total: -49.39 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.72 Total: 41.46 kcal Total: -73.66 4.39 -69.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.412 kcal (2) G-P(sol) polarization free energy of solvation -73.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds