Wall clock time and date at job start Sun Mar 29 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00350 * 2 1 4 4 C 1.50706 * 109.47001 * 89.99840 * 3 2 1 5 5 H 1.08000 * 119.99728 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99671 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00371 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99532 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47066 * 90.00140 * 8 6 4 10 10 H 1.48499 * 109.46933 * 210.00007 * 8 6 4 11 11 H 1.48496 * 109.47116 * 329.99979 * 8 6 4 12 12 C 1.34785 * 119.99959 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99744 * 184.84579 * 12 2 1 14 14 C 1.50698 * 120.00056 * 4.84708 * 12 2 1 15 15 H 1.08999 * 109.39885 * 332.51363 * 14 12 2 16 16 C 1.53063 * 109.40362 * 212.76944 * 14 12 2 17 17 C 1.53326 * 108.43811 * 190.98148 * 16 14 12 18 18 C 1.52916 * 108.68632 * 67.50454 * 17 16 14 19 19 N 1.45745 * 110.49044 * 309.25826 * 18 17 16 20 20 C 1.33353 * 124.10663 * 19.09469 * 19 18 17 21 21 O 1.21282 * 118.24631 * 177.75600 * 20 19 18 22 22 H 1.08996 * 109.47115 * 264.75840 * 1 2 3 23 23 H 1.09001 * 109.47082 * 144.76153 * 1 2 3 24 24 H 1.08998 * 109.47009 * 24.76278 * 1 2 3 25 25 H 1.08999 * 109.47292 * 210.00156 * 3 2 1 26 26 H 1.08998 * 109.46815 * 329.99996 * 3 2 1 27 27 H 0.97000 * 120.00343 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.67264 * 310.70287 * 16 14 12 29 29 H 1.08998 * 109.67499 * 71.23407 * 16 14 12 30 30 H 1.08996 * 109.58840 * 307.74620 * 17 16 14 31 31 H 1.09002 * 109.60516 * 187.27407 * 17 16 14 32 32 H 1.09002 * 109.30040 * 188.94324 * 18 17 16 33 33 H 1.09006 * 109.29801 * 69.57067 * 18 17 16 34 34 H 0.97004 * 117.95023 * 199.07896 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1261 2.8779 1.6728 7 7 3.5535 3.6180 0.6732 8 14 3.4380 3.4167 3.4340 9 1 4.7335 2.8600 3.8999 10 1 3.4852 4.8996 3.4969 11 1 2.3433 2.9189 4.3051 12 6 2.1389 -1.1673 0.0005 13 8 3.3485 -1.1691 0.0893 14 6 1.3895 -2.4701 -0.1092 15 1 0.3862 -2.3461 0.2986 16 6 2.1288 -3.5504 0.6840 17 6 1.5139 -4.9118 0.3387 18 6 1.8345 -5.2383 -1.1204 19 7 1.4767 -4.1201 -1.9839 20 6 1.2949 -2.8711 -1.5533 21 8 1.0392 -2.0133 -2.3717 22 1 -0.3633 -0.0939 1.0233 23 1 -0.3633 -0.8394 -0.5929 24 1 -0.3633 0.9332 -0.4304 25 1 3.1500 1.1383 -0.5138 26 1 1.6085 2.0283 -0.5138 27 1 4.0304 4.4439 0.8504 28 1 3.1848 -3.5459 0.4139 29 1 2.0219 -3.3595 1.7518 30 1 0.4334 -4.8700 0.4752 31 1 1.9372 -5.6793 0.9868 32 1 1.2729 -6.1219 -1.4237 33 1 2.9009 -5.4420 -1.2180 34 1 1.3639 -4.2952 -2.9313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601013606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:52 Heat of formation + Delta-G solvation = -103.690006 kcal Electronic energy + Delta-G solvation = -17757.506316 eV Core-core repulsion = 14881.955627 eV Total energy + Delta-G solvation = -2875.550689 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.95797 -39.96259 -37.55887 -36.63781 -34.83790 -33.99706 -31.14104 -29.65229 -27.44487 -26.21139 -24.58296 -23.72090 -20.93220 -19.66568 -18.75420 -18.45709 -18.05195 -17.46746 -17.14086 -16.34056 -15.85974 -15.67344 -15.18704 -14.84231 -14.57488 -14.39196 -14.08250 -13.80486 -13.54354 -13.28218 -12.96521 -12.79994 -12.58201 -12.35018 -12.25348 -12.20472 -11.85801 -11.72419 -10.93758 -10.68606 -10.66405 -10.07861 -9.47065 -8.23241 -6.39427 1.30590 1.36556 1.40500 1.50458 1.65320 2.24735 2.40811 2.47316 3.05709 3.41386 3.59586 3.71643 3.86331 4.13344 4.20880 4.34425 4.55037 4.67268 4.75499 4.82851 4.86889 4.94984 5.04022 5.08787 5.15264 5.34673 5.52927 5.78490 5.81534 6.02031 6.19808 6.63336 6.71812 7.10560 7.22791 7.37783 8.84642 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.039592 B = 0.006254 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.052618 B = 4475.841943 C = 4763.802083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.600 5.600 3 C 0.260 3.740 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.932 5.932 8 Si 0.975 3.025 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.259 1.259 12 C 0.513 3.487 13 O -0.591 6.591 14 C -0.119 4.119 15 H 0.147 0.853 16 C -0.111 4.111 17 C -0.125 4.125 18 C 0.100 3.900 19 N -0.704 5.704 20 C 0.529 3.471 21 O -0.591 6.591 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.069 0.931 25 H -0.009 1.009 26 H 0.021 0.979 27 H 0.268 0.732 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.968 -20.468 0.312 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.330 5.330 3 C 0.139 3.861 4 C -0.580 4.580 5 H 0.076 0.924 6 C -0.195 4.195 7 N -0.572 5.572 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.182 1.182 12 C 0.300 3.700 13 O -0.472 6.472 14 C -0.143 4.143 15 H 0.164 0.836 16 C -0.149 4.149 17 C -0.163 4.163 18 C -0.023 4.023 19 N -0.355 5.355 20 C 0.315 3.685 21 O -0.472 6.472 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.009 0.991 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.386 -19.822 0.129 21.524 hybrid contribution 0.533 0.935 0.075 1.079 sum -7.854 -18.887 0.204 20.456 Atomic orbital electron populations 1.21888 0.78118 1.03572 1.02362 1.48071 1.08353 1.06409 1.70136 1.18804 0.90706 0.80100 0.96493 1.21670 1.37054 1.06683 0.92585 0.92401 1.25970 0.94739 0.96271 1.02508 1.70077 1.38839 1.14866 1.33375 0.85305 0.78772 0.77502 0.78547 1.20439 1.19927 1.18243 1.20561 0.87420 0.85868 0.76110 1.90620 1.16434 1.87756 1.52359 1.21481 1.04006 0.93802 0.95051 0.83563 1.21640 0.99608 0.93431 1.00246 1.21934 1.02812 0.95695 0.95823 1.21805 1.01968 0.88265 0.90249 1.45369 1.69329 1.07553 1.13267 1.19621 0.75954 0.83094 0.89837 1.90784 1.50783 1.49795 1.55814 0.90978 0.89997 0.91166 0.99086 0.96109 0.92332 0.92124 0.89616 0.89087 0.86293 0.86282 0.90944 0.75494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.92 9.84 127.77 1.26 4.18 16 2 N -0.60 -28.69 2.86 -851.13 -2.43 -31.12 16 3 C 0.26 15.33 5.17 85.64 0.44 15.78 16 4 C -0.54 -32.69 9.39 25.60 0.24 -32.45 16 5 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 6 C 0.00 0.22 5.46 84.66 0.46 0.68 16 7 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 8 Si 0.98 45.95 29.54 68.60 2.03 47.97 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 C 0.51 23.62 6.21 87.66 0.54 24.16 16 13 O -0.59 -32.84 15.64 -3.03 -0.05 -32.89 16 14 C -0.12 -3.69 1.99 -12.43 -0.02 -3.71 16 15 H 0.15 3.60 6.38 -2.39 -0.02 3.58 16 16 C -0.11 -2.64 5.14 30.72 0.16 -2.48 16 17 C -0.13 -1.50 6.02 30.68 0.18 -1.31 16 18 C 0.10 1.16 7.17 86.49 0.62 1.78 16 19 N -0.70 -14.37 5.45 -467.33 -2.55 -16.91 16 20 C 0.53 16.45 7.20 87.71 0.63 17.08 16 21 O -0.59 -23.89 16.58 -3.04 -0.05 -23.94 16 22 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.08 2.48 5.88 -2.39 -0.01 2.46 16 24 H 0.07 2.48 7.83 -2.39 -0.02 2.46 16 25 H -0.01 -0.61 7.49 -2.39 -0.02 -0.63 16 26 H 0.02 1.25 7.86 -2.39 -0.02 1.23 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.06 1.78 7.46 -2.39 -0.02 1.76 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.41 7.20 8.80 -92.71 -0.82 6.38 16 Total: -1.00 -85.79 284.90 2.05 -83.74 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.29 Total: 7.90 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 4.52 Total: 23.70 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.69 Total: -106.49 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -0.10 Total: -56.83 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -85.79 2.05 -83.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.947 kcal (2) G-P(sol) polarization free energy of solvation -85.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds