Wall clock time and date at job start Sun Mar 29 2020 22:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47314 * 2 1 4 4 C 1.37096 * 119.99871 * 85.14983 * 3 2 1 5 5 H 1.08003 * 119.99986 * 299.46133 * 4 3 2 6 6 C 1.38946 * 120.00485 * 119.46346 * 4 3 2 7 7 N 1.31411 * 119.99864 * 349.01366 * 6 4 3 8 8 Si 1.86798 * 120.00164 * 169.00962 * 6 4 3 9 9 H 1.48504 * 109.47019 * 90.00500 * 8 6 4 10 10 H 1.48507 * 109.47092 * 210.00200 * 8 6 4 11 11 H 1.48494 * 109.47222 * 330.00154 * 8 6 4 12 12 C 1.34776 * 120.00173 * 265.14367 * 3 2 1 13 13 O 1.21299 * 119.99788 * 4.94271 * 12 3 2 14 14 C 1.50697 * 120.00129 * 184.93790 * 12 3 2 15 15 H 1.09000 * 109.39929 * 48.92424 * 14 12 3 16 16 C 1.53067 * 109.40004 * 168.74929 * 14 12 3 17 17 C 1.53303 * 108.43500 * 169.12778 * 16 14 12 18 18 C 1.52922 * 108.61255 * 292.35154 * 17 16 14 19 19 N 1.45758 * 110.48805 * 50.76314 * 18 17 16 20 20 C 1.33359 * 124.10268 * 340.94733 * 19 18 17 21 21 O 1.21286 * 118.24465 * 182.20057 * 20 19 18 22 22 H 1.09002 * 109.47394 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47365 * 299.99945 * 1 2 3 24 24 H 1.09004 * 109.47239 * 59.99674 * 1 2 3 25 25 H 1.09003 * 109.47156 * 239.99561 * 2 1 3 26 26 H 1.09004 * 109.47239 * 120.00326 * 2 1 3 27 27 H 0.97005 * 119.99821 * 4.18959 * 7 6 4 28 28 H 1.09002 * 109.67438 * 288.76531 * 16 14 12 29 29 H 1.09001 * 109.67799 * 49.29761 * 16 14 12 30 30 H 1.08997 * 109.62863 * 172.61824 * 17 16 14 31 31 H 1.09005 * 109.78052 * 52.17025 * 17 16 14 32 32 H 1.09003 * 109.30034 * 290.45141 * 18 17 16 33 33 H 1.08996 * 109.13632 * 170.96793 * 18 17 16 34 34 H 0.96988 * 117.95113 * 160.92963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1522 2.0609 1.1831 5 1 1.2887 2.2300 1.8094 6 6 3.3987 2.5323 1.5764 7 7 4.4790 2.1475 0.9348 8 14 3.5387 3.7131 3.0170 9 1 3.7096 2.9417 4.2745 10 1 4.7125 4.6006 2.8173 11 1 2.3055 4.5356 3.1046 12 6 2.3361 1.9836 -1.1630 13 8 2.1337 1.4155 -2.2154 14 6 2.9428 3.3630 -1.1559 15 1 3.7705 3.3909 -0.4471 16 6 3.4616 3.6975 -2.5566 17 6 3.8211 5.1873 -2.5974 18 6 2.5336 6.0036 -2.4766 19 7 1.7471 5.5500 -1.3363 20 6 1.9011 4.3641 -0.7461 21 8 1.1605 4.0790 0.1711 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.4017 1.5831 0.1496 28 1 4.3485 3.1015 -2.7715 29 1 2.6883 3.4850 -3.2948 30 1 4.3139 5.4192 -3.5416 31 1 4.4865 5.4290 -1.7686 32 1 1.9469 5.8880 -3.3879 33 1 2.7884 7.0549 -2.3431 34 1 1.0694 6.1481 -0.9847 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601016469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:55 Heat of formation + Delta-G solvation = -91.342629 kcal Electronic energy + Delta-G solvation = -18830.090090 eV Core-core repulsion = 15955.074824 eV Total energy + Delta-G solvation = -2875.015266 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.83390 -39.87763 -37.50703 -36.75159 -34.69813 -33.37997 -31.32526 -30.43924 -26.62033 -25.98827 -23.81841 -23.54041 -21.62066 -20.24144 -19.01397 -18.10044 -17.66658 -17.29399 -16.86985 -15.95377 -15.66677 -15.48635 -15.04569 -14.87234 -14.75744 -14.50378 -14.15890 -13.87172 -13.33897 -12.97096 -12.89613 -12.61422 -12.32353 -12.12571 -12.05079 -11.96234 -11.85702 -11.64264 -10.94002 -10.43110 -10.25404 -9.88826 -9.48373 -8.64794 -6.20840 1.49599 1.56981 1.67215 1.81152 1.88736 2.40618 2.56348 2.87724 3.03725 3.81986 3.82798 3.94681 3.96774 4.11145 4.37524 4.43800 4.51977 4.56932 4.63368 4.79972 4.84143 4.95379 4.97545 5.04120 5.07960 5.22804 5.35314 5.87849 6.05347 6.12291 6.28166 6.40420 7.11289 7.36886 7.43603 7.81462 8.61002 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.014369 C = 0.010441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.220978 B = 1948.184233 C = 2681.141791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.099 3.901 3 N -0.466 5.466 4 C -0.356 4.356 5 H 0.055 0.945 6 C -0.028 4.028 7 N -0.907 5.907 8 Si 1.110 2.890 9 H -0.268 1.268 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.496 3.504 13 O -0.625 6.625 14 C -0.136 4.136 15 H 0.138 0.862 16 C -0.102 4.102 17 C -0.129 4.129 18 C 0.108 3.892 19 N -0.719 5.719 20 C 0.520 3.480 21 O -0.549 6.549 22 H 0.088 0.912 23 H 0.047 0.953 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.255 0.745 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 8.430 -4.553 9.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 N -0.185 5.185 4 C -0.485 4.485 5 H 0.073 0.927 6 C -0.226 4.226 7 N -0.546 5.546 8 Si 0.931 3.069 9 H -0.193 1.193 10 H -0.197 1.197 11 H -0.206 1.206 12 C 0.286 3.714 13 O -0.512 6.512 14 C -0.160 4.160 15 H 0.154 0.846 16 C -0.140 4.140 17 C -0.167 4.167 18 C -0.015 4.015 19 N -0.374 5.374 20 C 0.306 3.694 21 O -0.426 6.426 22 H 0.107 0.893 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.290 8.617 -3.695 9.381 hybrid contribution -1.344 -1.092 -0.795 1.906 sum -1.634 7.525 -4.490 8.914 Atomic orbital electron populations 1.21861 0.95152 1.02271 1.00481 1.21559 0.95474 0.84566 1.00739 1.43676 1.58267 1.10886 1.05707 1.19940 0.95920 1.34064 0.98551 0.92675 1.27568 0.90748 0.99561 1.04706 1.70860 1.29803 1.34219 1.19737 0.82948 0.76221 0.74852 0.72833 1.19301 1.19734 1.20589 1.20718 0.79445 0.87873 0.83400 1.90461 1.60289 1.68150 1.32306 1.21796 1.00024 0.91655 1.02507 0.84552 1.21477 1.00931 0.98267 0.93303 1.21913 0.97670 0.92168 1.04931 1.21667 0.91843 0.99925 0.88095 1.45461 1.40556 1.16815 1.34539 1.19719 0.84554 0.83011 0.82147 1.90806 1.45075 1.76836 1.29884 0.89342 0.93379 0.95059 0.92683 0.91236 0.93439 0.91920 0.91846 0.86211 0.91399 0.90372 0.86893 0.75983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 10.21 71.98 0.74 -5.00 16 2 C 0.10 4.72 6.12 86.38 0.53 5.25 16 3 N -0.47 -25.27 2.04 -635.54 -1.30 -26.57 16 4 C -0.36 -19.78 5.82 84.04 0.49 -19.29 16 5 H 0.06 3.23 7.75 -2.91 -0.02 3.21 16 6 C -0.03 -1.48 3.84 84.93 0.33 -1.16 16 7 N -0.91 -50.99 11.82 21.66 0.26 -50.73 16 8 Si 1.11 49.07 29.93 68.60 2.05 51.12 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.50 26.81 5.62 87.66 0.49 27.30 16 13 O -0.62 -35.18 15.30 -3.09 -0.05 -35.23 16 14 C -0.14 -6.38 1.85 -12.43 -0.02 -6.41 16 15 H 0.14 7.05 4.38 -2.39 -0.01 7.04 16 16 C -0.10 -3.77 4.89 30.72 0.15 -3.62 16 17 C -0.13 -3.28 6.02 30.67 0.18 -3.09 16 18 C 0.11 2.36 7.17 86.49 0.62 2.98 16 19 N -0.72 -22.78 5.45 -467.29 -2.55 -25.33 16 20 C 0.52 23.07 7.18 87.71 0.63 23.70 16 21 O -0.55 -28.53 14.07 -3.05 -0.04 -28.58 16 22 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.05 2.63 7.35 -2.39 -0.02 2.61 16 26 H 0.07 3.17 8.08 -2.38 -0.02 3.15 16 27 H 0.25 15.01 6.73 -92.70 -0.62 14.38 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.44 7.56 -2.39 -0.02 2.42 16 30 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 1.82 8.13 -2.38 -0.02 1.80 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.40 11.10 8.80 -92.72 -0.82 10.29 16 Total: -1.00 -71.83 274.45 2.95 -68.88 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.44 Total: 25.77 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 4.13 Total: 20.66 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -3.59 Total: -102.63 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -0.09 Total: -63.80 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.05 Total: 51.12 kcal Total: -71.83 2.95 -68.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601016469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.462 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds