Wall clock time and date at job start Sun Mar 29 2020 22:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99523 * 2 1 4 4 C 1.50706 * 109.47043 * 180.02562 * 3 2 1 5 5 C 1.35451 * 126.77668 * 90.00227 * 4 3 2 6 6 C 1.41380 * 103.98649 * 180.22754 * 5 4 3 7 7 C 1.50696 * 126.80347 * 179.77327 * 6 5 4 8 8 N 1.46902 * 109.47008 * 94.99495 * 7 6 5 9 9 C 1.46902 * 110.99680 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46966 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46901 * 180.02562 * 10 9 8 12 12 H 1.08007 * 120.00376 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99978 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00108 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00077 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47358 * 89.99515 * 15 13 11 17 17 H 1.48504 * 109.47292 * 210.00257 * 15 13 11 18 18 H 1.48505 * 109.46963 * 329.99541 * 15 13 11 19 19 N 1.30187 * 106.39102 * 359.62830 * 6 5 4 20 20 O 1.20916 * 111.60590 * 0.39612 * 19 6 5 21 21 H 1.08992 * 109.47143 * 60.00581 * 1 2 3 22 22 H 1.09007 * 109.46480 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47066 * 299.99920 * 1 2 3 24 24 H 1.09003 * 109.47785 * 60.00070 * 3 2 1 25 25 H 1.09005 * 109.47205 * 299.99662 * 3 2 1 26 26 H 1.08002 * 128.00468 * 359.95534 * 5 4 3 27 27 H 1.08999 * 109.46881 * 214.99426 * 7 6 5 28 28 H 1.08995 * 109.46838 * 334.99621 * 7 6 5 29 29 H 1.00898 * 111.00292 * 303.94865 * 8 7 6 30 30 H 1.08998 * 109.47455 * 299.99944 * 9 8 7 31 31 H 1.09003 * 109.47017 * 59.99915 * 9 8 7 32 32 H 1.08999 * 109.47144 * 299.99459 * 10 9 8 33 33 H 1.08999 * 109.46872 * 60.00268 * 10 9 8 34 34 H 0.97002 * 119.99526 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.3205 1.1229 -1.0859 6 6 5.6196 1.0145 -0.5388 7 6 6.9144 0.9050 -1.3021 8 7 7.5113 2.2394 -1.4476 9 6 8.7783 2.1714 -2.1880 10 6 9.3687 3.5769 -2.3185 11 6 10.6681 3.5072 -3.0785 12 1 11.0359 2.5557 -3.4334 13 6 11.3871 4.6582 -3.3218 14 7 12.5214 4.5973 -3.9847 15 14 10.7508 6.3040 -2.7087 16 1 11.2764 6.5606 -1.3437 17 1 11.2035 7.3820 -3.6242 18 1 9.2665 6.2778 -2.6707 19 7 5.4760 1.0311 0.7550 20 8 4.3129 1.1231 1.0727 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6886 1.8465 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 4.0374 1.1448 -2.1279 27 1 7.6022 0.2565 -0.7596 28 1 6.7200 0.4844 -2.2886 29 1 6.8672 2.8774 -1.8905 30 1 9.4789 1.5318 -1.6513 31 1 8.5973 1.7593 -3.1807 32 1 8.6683 4.2168 -2.8551 33 1 9.5498 3.9885 -1.3256 34 1 13.0270 5.4072 -4.1561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603437528.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:41 Heat of formation + Delta-G solvation = -10.776288 kcal Electronic energy + Delta-G solvation = -16199.292065 eV Core-core repulsion = 13327.770417 eV Total energy + Delta-G solvation = -2871.521648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.00990 -38.89608 -38.00288 -35.60804 -34.52506 -33.58372 -31.84179 -28.67832 -27.88294 -26.44256 -25.18124 -23.96213 -22.39569 -21.14132 -19.00380 -18.75913 -18.47100 -17.19307 -17.08686 -16.71022 -16.37759 -16.13601 -15.57395 -15.21290 -14.79928 -14.63565 -14.29316 -13.93294 -13.49482 -13.20457 -12.95695 -12.90435 -12.38379 -12.24051 -12.01149 -11.89797 -11.71024 -11.43822 -11.17583 -10.78338 -10.71021 -10.55778 -9.44205 -8.31001 -6.35687 0.34765 1.12464 1.37060 1.37812 1.50376 2.02528 2.35759 2.96429 3.04571 3.11856 3.33510 3.59165 3.99684 4.09135 4.19827 4.33737 4.38112 4.50595 4.52749 4.57445 4.62377 4.64155 4.78249 4.93113 4.93454 5.01527 5.23304 5.45547 5.60624 5.98627 6.10314 6.22431 6.41590 6.72447 7.26628 7.29278 8.85539 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.050532 B = 0.003532 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.976301 B = 7926.665877 C = 8098.475531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.146 3.854 4 C -0.042 4.042 5 C -0.200 4.200 6 C 0.009 3.991 7 C 0.137 3.863 8 N -0.693 5.693 9 C 0.088 3.912 10 C -0.004 4.004 11 C -0.534 4.534 12 H 0.035 0.965 13 C 0.005 3.995 14 N -0.950 5.950 15 Si 0.954 3.046 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.246 1.246 19 N -0.376 5.376 20 O 0.100 5.900 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.200 0.800 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.346 0.654 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.082 -6.249 6.553 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.069 3.931 4 C -0.106 4.106 5 C -0.222 4.222 6 C -0.149 4.149 7 C 0.008 3.992 8 N -0.326 5.326 9 C -0.040 4.040 10 C -0.042 4.042 11 C -0.572 4.572 12 H 0.053 0.947 13 C -0.192 4.192 14 N -0.590 5.590 15 Si 0.777 3.223 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.170 1.170 19 N -0.079 5.079 20 O 0.030 5.970 21 H 0.080 0.920 22 H 0.113 0.887 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.217 0.783 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.164 0.836 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.668 -6.421 8.128 28.609 hybrid contribution -0.204 0.607 -1.515 1.645 sum -26.873 -5.814 6.613 28.279 Atomic orbital electron populations 1.23005 0.78015 1.04201 1.01760 1.87924 1.22460 1.27307 1.95855 1.20878 0.81173 0.85945 1.05134 1.24617 0.96319 1.03867 0.85751 1.22819 0.90194 1.06775 1.02402 1.23672 0.97854 1.03461 0.89898 1.20180 0.89289 0.91790 0.97954 1.60417 1.06488 1.09300 1.56425 1.21659 0.89537 0.98066 0.94786 1.19432 0.94388 0.94497 0.95911 1.21395 1.06184 0.94367 1.35293 0.94691 1.25993 0.94742 1.03658 0.94765 1.70064 1.16170 1.30180 1.42624 0.85604 0.80252 0.78135 0.78280 1.19634 1.20756 1.16963 1.73888 0.97544 1.18790 1.17689 1.84805 1.11512 1.66546 1.34112 0.92012 0.88682 0.92388 0.88983 0.86777 0.78281 0.90256 0.90699 0.83570 0.92470 0.95119 0.95860 0.96463 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.36 10.69 -148.98 -1.59 -7.95 16 3 C 0.15 1.75 6.50 71.24 0.46 2.21 16 4 C -0.04 -0.85 7.12 25.04 0.18 -0.67 16 5 C -0.20 -4.17 11.06 22.40 0.25 -3.92 16 6 C 0.01 0.26 6.84 43.57 0.30 0.56 16 7 C 0.14 3.90 6.27 85.56 0.54 4.43 16 8 N -0.69 -23.35 6.49 -517.93 -3.36 -26.71 16 9 C 0.09 3.52 5.62 86.30 0.49 4.00 16 10 C 0.00 -0.21 4.30 29.85 0.13 -0.08 16 11 C -0.53 -31.24 9.66 25.60 0.25 -31.00 16 12 H 0.03 2.23 7.99 -2.91 -0.02 2.21 16 13 C 0.01 0.32 5.47 84.65 0.46 0.78 16 14 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 15 Si 0.95 45.14 27.47 68.60 1.88 47.03 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 19 N -0.38 -11.79 12.07 -49.54 -0.60 -12.39 16 20 O 0.10 2.68 11.20 71.63 0.80 3.48 16 21 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 22 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 23 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.35 10.61 8.72 -89.70 -0.78 9.83 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 33 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -73.00 297.61 1.99 -71.01 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.25 Total: 7.65 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 4.30 Total: -22.24 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.66 Total: -98.98 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.79 Total: -4.47 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Total: -73.00 1.99 -71.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603437528.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.235 kcal (2) G-P(sol) polarization free energy of solvation -72.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds