Wall clock time and date at job start Sun Mar 29 2020 22:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 120.00000 * 2 1 4 4 C 1.50704 * 109.46905 * 90.00584 * 3 2 1 5 5 H 1.08002 * 119.99769 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00000 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99948 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00011 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46975 * 59.99906 * 8 6 4 10 10 H 1.48498 * 109.46923 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46925 * 299.99824 * 8 6 4 12 12 C 1.34770 * 119.99826 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00235 * 185.51361 * 12 2 1 14 14 C 1.50705 * 120.00091 * 5.51473 * 12 2 1 15 15 H 1.08996 * 110.43579 * 25.63371 * 14 12 2 16 16 C 1.54627 * 110.48827 * 148.17297 * 14 12 2 17 17 C 1.54486 * 101.76488 * 93.87796 * 16 14 12 18 18 N 1.46764 * 105.47217 * 25.41774 * 17 16 14 19 19 C 1.46496 * 124.34557 * 162.97921 * 18 17 16 20 20 C 1.34419 * 111.30142 * 342.98219 * 18 17 16 21 21 O 1.21276 * 124.94511 * 180.44454 * 20 18 17 22 22 H 1.08996 * 109.46975 * 93.75741 * 1 2 3 23 23 H 1.09001 * 109.47230 * 213.76305 * 1 2 3 24 24 H 1.09006 * 109.46573 * 333.75995 * 1 2 3 25 25 H 1.08995 * 109.46871 * 209.99836 * 3 2 1 26 26 H 1.09001 * 109.47602 * 330.00240 * 3 2 1 27 27 H 0.96996 * 120.00283 * 180.02562 * 7 6 4 28 28 H 1.08994 * 110.97266 * 212.00260 * 16 14 12 29 29 H 1.09004 * 110.96566 * 335.76346 * 16 14 12 30 30 H 1.09002 * 110.24216 * 144.41723 * 17 16 14 31 31 H 1.08997 * 110.24445 * 266.32724 * 17 16 14 32 32 H 1.08998 * 109.46881 * 90.00767 * 19 18 17 33 33 H 1.09009 * 109.46803 * 209.99706 * 19 18 17 34 34 H 1.08996 * 109.47837 * 330.00097 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 1.4209 5 1 2.0976 1.0959 2.2417 6 6 3.1261 2.8778 1.6729 7 7 3.5534 3.6180 0.6733 8 14 3.4370 3.4173 3.4341 9 1 4.2397 2.3827 4.1343 10 1 4.1796 4.7033 3.4341 11 1 2.1392 3.5945 4.1338 12 6 2.1389 -1.1672 -0.0005 13 8 3.3475 -1.1697 0.1004 14 6 1.3905 -2.4692 -0.1265 15 1 0.4427 -2.3151 -0.6422 16 6 2.2487 -3.5166 -0.8732 17 6 2.9289 -4.2594 0.2982 18 7 2.0318 -4.0845 1.4464 19 6 2.0792 -4.8980 2.6638 20 6 1.1609 -3.0821 1.2375 21 8 0.3148 -2.7209 2.0276 22 1 -0.3633 -0.0673 -1.0254 23 1 -0.3634 -0.8543 0.5711 24 1 -0.3633 0.9218 0.4544 25 1 3.1499 1.1383 -0.5138 26 1 1.6085 2.0284 -0.5138 27 1 4.0302 4.4439 0.8505 28 1 1.6211 -4.1936 -1.4527 29 1 2.9888 -3.0320 -1.5101 30 1 3.0369 -5.3179 0.0616 31 1 3.9035 -3.8192 0.5087 32 1 2.7549 -4.4358 3.3834 33 1 1.0803 -4.9654 3.0949 34 1 2.4376 -5.8978 2.4191 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613906052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:41 Heat of formation + Delta-G solvation = -87.639558 kcal Electronic energy + Delta-G solvation = -17819.428226 eV Core-core repulsion = 14944.573537 eV Total energy + Delta-G solvation = -2874.854689 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.05097 -39.95196 -37.59917 -36.57695 -34.83333 -33.78469 -30.25356 -28.72672 -27.73985 -27.30586 -25.19143 -23.04080 -21.21216 -19.93931 -18.74907 -18.52180 -17.83708 -17.21736 -16.75061 -16.55650 -15.95405 -15.71865 -14.77423 -14.73613 -14.51914 -14.15534 -13.83868 -13.72263 -13.59119 -13.52201 -13.30819 -13.08959 -12.85974 -12.63404 -12.27950 -12.24583 -12.22523 -11.77789 -11.10023 -10.71390 -10.67951 -9.75457 -9.48916 -8.26951 -6.41322 1.14097 1.31890 1.35385 1.43667 1.67653 2.06879 2.28131 2.43307 3.01896 3.30657 3.40740 3.60784 3.99002 4.18023 4.35548 4.37250 4.42684 4.59966 4.63904 4.67363 4.81453 4.90582 4.96063 4.97401 5.12418 5.16191 5.49556 5.50925 5.76728 5.94675 6.01693 6.60323 6.68757 6.98113 7.19738 7.34928 8.79710 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.007159 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.202215 B = 3910.045793 C = 4183.255512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.605 5.605 3 C 0.261 3.739 4 C -0.548 4.548 5 H 0.040 0.960 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.280 1.280 10 H -0.270 1.270 11 H -0.265 1.265 12 C 0.513 3.487 13 O -0.577 6.577 14 C -0.145 4.145 15 H 0.147 0.853 16 C -0.105 4.105 17 C 0.101 3.899 18 N -0.617 5.617 19 C 0.091 3.909 20 C 0.521 3.479 21 O -0.565 6.565 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.006 0.994 26 H 0.030 0.970 27 H 0.270 0.730 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 -18.002 -3.421 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.336 5.336 3 C 0.140 3.860 4 C -0.586 4.586 5 H 0.058 0.942 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.206 1.206 10 H -0.194 1.194 11 H -0.190 1.190 12 C 0.300 3.700 13 O -0.458 6.458 14 C -0.169 4.169 15 H 0.165 0.835 16 C -0.142 4.142 17 C -0.021 4.021 18 N -0.350 5.350 19 C -0.050 4.050 20 C 0.307 3.693 21 O -0.444 6.444 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.025 0.975 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.151 0.849 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.859 -17.686 -2.929 18.574 hybrid contribution 0.365 0.927 1.028 1.432 sum -4.494 -16.758 -1.901 17.454 Atomic orbital electron populations 1.21950 0.78163 1.03586 1.02886 1.48179 1.08348 1.06567 1.70473 1.18816 0.91290 0.80082 0.95835 1.21617 1.37252 1.06696 0.93076 0.94167 1.25768 0.94768 0.96209 1.01880 1.70007 1.38649 1.14763 1.32804 0.85556 0.78761 0.77623 0.79417 1.20608 1.19405 1.18962 1.20427 0.87428 0.85439 0.76735 1.90637 1.16014 1.87575 1.51547 1.22235 1.03847 0.93710 0.97128 0.83504 1.22650 0.99138 0.95527 0.96911 1.22360 0.92691 1.03317 0.83731 1.48311 1.33454 1.33673 1.19572 1.21761 1.02771 0.95763 0.84683 1.20571 0.80665 0.80034 0.88002 1.90684 1.37189 1.64980 1.51543 0.89612 0.90613 0.91462 0.97542 0.95190 0.92148 0.84920 0.89011 0.85522 0.92218 0.93442 0.91212 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.66 9.63 127.77 1.23 3.89 16 2 N -0.61 -27.57 2.86 -851.12 -2.43 -30.00 16 3 C 0.26 14.58 5.10 85.63 0.44 15.01 16 4 C -0.55 -33.49 9.39 25.60 0.24 -33.25 16 5 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 6 C 0.01 0.79 5.46 84.66 0.46 1.26 16 7 N -0.92 -56.64 13.29 21.45 0.28 -56.36 16 8 Si 0.96 46.94 29.54 68.60 2.03 48.96 16 9 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.51 22.15 6.68 87.66 0.59 22.74 16 13 O -0.58 -29.59 15.68 -3.04 -0.05 -29.64 16 14 C -0.14 -4.35 2.42 -11.54 -0.03 -4.38 16 15 H 0.15 3.54 6.79 -2.39 -0.02 3.52 16 16 C -0.10 -2.15 6.40 31.65 0.20 -1.95 16 17 C 0.10 2.07 7.14 86.83 0.62 2.69 16 18 N -0.62 -16.35 3.33 -842.90 -2.81 -19.16 16 19 C 0.09 1.86 10.96 127.77 1.40 3.26 16 20 C 0.52 17.60 7.28 87.90 0.64 18.24 16 21 O -0.56 -23.11 16.62 -3.02 -0.05 -23.16 16 22 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.08 2.52 5.92 -2.39 -0.01 2.51 16 24 H 0.07 2.46 8.04 -2.38 -0.02 2.44 16 25 H 0.01 0.40 7.50 -2.39 -0.02 0.39 16 26 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 2.11 7.61 -2.38 -0.02 2.09 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.50 7.93 -2.38 -0.02 1.48 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -81.81 289.93 3.85 -77.96 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 1.09 Total: 3.87 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 5.79 Total: 27.51 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -4.96 Total: -105.51 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.10 Total: -52.79 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -81.81 3.85 -77.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613906052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.680 kcal (2) G-P(sol) polarization free energy of solvation -81.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds