Wall clock time and date at job start Sun Mar 29 2020 22:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48498 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99607 * 3 2 1 6 6 H 1.48504 * 109.47204 * 59.99319 * 3 2 1 7 7 C 1.38951 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99890 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99767 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.46735 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 16 16 N 1.46901 * 109.47859 * 179.97438 * 15 14 13 17 17 C 1.48533 * 110.99670 * 52.60024 * 16 15 14 18 18 C 1.54936 * 103.22827 * 159.72645 * 17 16 15 19 19 C 1.54602 * 102.91755 * 322.58844 * 18 17 16 20 20 C 1.47895 * 111.00585 * 169.99973 * 16 15 14 21 21 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00430 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46797 * 60.00350 * 12 10 9 24 24 H 1.08992 * 109.47518 * 300.00347 * 12 10 9 25 25 H 1.09002 * 109.47398 * 300.00410 * 13 12 10 26 26 H 1.09001 * 109.47194 * 60.00591 * 13 12 10 27 27 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 28 28 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 29 29 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 30 30 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 31 31 H 1.09002 * 110.67270 * 278.16471 * 17 16 15 32 32 H 1.08998 * 110.66667 * 41.29259 * 17 16 15 33 33 H 1.09002 * 110.72666 * 204.23420 * 18 17 16 34 34 H 1.08998 * 110.72369 * 80.94172 * 18 17 16 35 35 H 1.09001 * 110.30688 * 263.03605 * 19 18 17 36 36 H 1.08996 * 110.30747 * 140.87557 * 19 18 17 37 37 H 1.08994 * 109.91810 * 333.51090 * 20 16 15 38 38 H 1.08999 * 109.91451 * 94.60787 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 6 2.2381 -6.0258 0.0016 14 6 1.4731 -7.3508 0.0016 15 6 2.4673 -8.5137 0.0028 16 7 1.7329 -9.7860 0.0033 17 6 0.7378 -9.8266 -1.0987 18 6 0.4662 -11.3417 -1.2754 19 6 1.8593 -11.9716 -1.0463 20 6 2.6456 -10.9250 -0.2353 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3906 0.0005 23 1 0.6169 -4.9208 -0.8887 24 1 0.6175 -4.9205 0.8912 25 1 2.8648 -5.9684 -0.8883 26 1 2.8647 -5.9677 0.8917 27 1 0.8461 -7.4084 0.8914 28 1 0.8468 -7.4088 -0.8886 29 1 3.0946 -8.4563 -0.8868 30 1 3.0933 -8.4557 0.8932 31 1 -0.1745 -9.3030 -0.8128 32 1 1.1566 -9.4019 -2.0110 33 1 0.1076 -11.5544 -2.2825 34 1 -0.2447 -11.6958 -0.5288 35 1 2.3515 -12.1586 -2.0007 36 1 1.7670 -12.8981 -0.4796 37 1 3.5146 -10.5920 -0.8026 38 1 2.9643 -11.3510 0.7160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729353389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:33 Heat of formation + Delta-G solvation = -58.534010 kcal Electronic energy + Delta-G solvation = -16665.075402 eV Core-core repulsion = 13927.315919 eV Total energy + Delta-G solvation = -2737.759483 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.16480 -38.19178 -34.99876 -33.84621 -31.84922 -31.13187 -29.17185 -28.10456 -25.10809 -23.42744 -21.68728 -20.93322 -20.20724 -18.99343 -17.78569 -16.28190 -15.97276 -15.69429 -15.44706 -14.52247 -14.32387 -14.01077 -13.91162 -13.18604 -13.06691 -12.64708 -12.48588 -11.97484 -11.69202 -11.59216 -11.54537 -11.33189 -11.13207 -10.95221 -10.85159 -10.76272 -10.64561 -10.32409 -10.21555 -10.18212 -9.49936 -8.54039 -8.33977 -7.93923 -6.39295 -3.79976 3.17732 3.27894 3.35450 3.85123 3.96571 4.20174 4.43703 4.49987 4.73002 4.93920 5.08240 5.12426 5.20854 5.28491 5.30576 5.46258 5.53748 5.55819 5.60360 5.67060 5.75894 5.79832 5.82313 5.90476 5.96744 6.09489 6.14922 6.19499 6.54534 6.62739 6.74270 6.78339 6.94753 7.57660 8.09379 8.64310 9.20550 9.58739 10.10347 10.78629 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.074466 B = 0.003289 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.920219 B = 8512.271367 C = 8768.230190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.440 3.560 11 O -0.599 6.599 12 C -0.129 4.129 13 C -0.096 4.096 14 C -0.119 4.119 15 C 0.047 3.953 16 N -0.520 5.520 17 C 0.032 3.968 18 C -0.125 4.125 19 C -0.131 4.131 20 C 0.033 3.967 21 H 0.271 0.729 22 H 0.393 0.607 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -19.771 -1.986 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.484 6.484 12 C -0.170 4.170 13 C -0.134 4.134 14 C -0.157 4.157 15 C -0.081 4.081 16 N -0.244 5.244 17 C -0.095 4.095 18 C -0.163 4.163 19 C -0.170 4.170 20 C -0.095 4.095 21 H 0.081 0.919 22 H 0.226 0.774 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.518 -19.633 -1.470 19.695 hybrid contribution 0.189 1.036 -0.788 1.315 sum -0.329 -18.597 -2.258 18.737 Atomic orbital electron populations 1.69625 1.05934 1.28005 1.50799 1.25270 0.95635 0.99726 0.97405 0.85810 0.79704 0.81184 0.77701 1.19244 1.20759 1.20744 1.19773 0.93403 0.82419 1.47369 0.87947 1.41946 1.09240 1.04760 1.64136 1.20048 0.88303 0.85162 0.83886 1.90500 1.14150 1.87541 1.56253 1.21473 0.98874 0.94033 1.02614 1.21193 0.97490 0.91513 1.03222 1.21696 0.98070 0.93536 1.02379 1.22351 0.96016 0.88645 1.01095 1.64823 1.13816 1.02680 1.43088 1.23255 0.96910 0.96391 0.92974 1.22497 0.97092 0.95090 1.01651 1.22398 0.96013 0.98638 0.99913 1.22872 0.94864 0.91948 0.99772 0.91949 0.77393 0.90718 0.90553 0.91731 0.91424 0.91227 0.92125 0.94638 0.90490 0.89772 0.93658 0.91196 0.90783 0.91666 0.91128 0.93815 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.57 9.68 -14.94 -0.14 -8.71 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 16 10 C 0.44 10.68 7.78 -10.98 -0.09 10.59 16 11 O -0.60 -16.66 15.56 5.55 0.09 -16.57 16 12 C -0.13 -2.31 5.70 -27.88 -0.16 -2.47 16 13 C -0.10 -1.53 4.50 -26.73 -0.12 -1.65 16 14 C -0.12 -1.51 4.87 -26.74 -0.13 -1.64 16 15 C 0.05 0.56 5.03 -3.83 -0.02 0.54 16 16 N -0.52 -5.81 5.40 -230.47 -1.24 -7.05 16 17 C 0.03 0.32 5.10 -1.90 -0.01 0.31 16 18 C -0.13 -1.02 7.06 -24.87 -0.18 -1.19 16 19 C -0.13 -1.03 6.93 -25.37 -0.18 -1.21 16 20 C 0.03 0.32 6.69 -2.76 -0.02 0.30 16 21 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 22 H 0.39 9.80 7.90 -40.82 -0.32 9.47 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 1.11 8.10 -51.93 -0.42 0.68 16 26 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.73 6.80 -51.93 -0.35 0.38 16 29 H 0.04 0.43 7.81 -51.93 -0.41 0.02 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.83 7.66 -51.93 -0.40 0.43 16 32 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.04 0.41 7.57 -51.93 -0.39 0.02 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -31.23 309.70 -8.43 -39.65 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.44 Total: 6.71 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.13 Total: -4.65 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.58 Total: -46.14 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.23 -8.43 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729353389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.880 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds