Wall clock time and date at job start Sun Mar 29 2020 22:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48498 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99607 * 3 2 1 6 6 H 1.48504 * 109.47204 * 59.99319 * 3 2 1 7 7 C 1.38951 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99890 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99767 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.46735 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 16 16 N 1.46901 * 109.47859 * 179.97438 * 15 14 13 17 17 C 1.48533 * 110.99670 * 52.60024 * 16 15 14 18 18 C 1.54936 * 103.22827 * 159.72645 * 17 16 15 19 19 C 1.54602 * 102.91755 * 322.58844 * 18 17 16 20 20 C 1.47895 * 111.00585 * 169.99973 * 16 15 14 21 21 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00430 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46797 * 60.00350 * 12 10 9 24 24 H 1.08992 * 109.47518 * 300.00347 * 12 10 9 25 25 H 1.09002 * 109.47398 * 300.00410 * 13 12 10 26 26 H 1.09001 * 109.47194 * 60.00591 * 13 12 10 27 27 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 28 28 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 29 29 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 30 30 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 31 31 H 1.09002 * 110.67270 * 278.16471 * 17 16 15 32 32 H 1.08998 * 110.66667 * 41.29259 * 17 16 15 33 33 H 1.09002 * 110.72666 * 204.23420 * 18 17 16 34 34 H 1.08998 * 110.72369 * 80.94172 * 18 17 16 35 35 H 1.09001 * 110.30688 * 263.03605 * 19 18 17 36 36 H 1.08996 * 110.30747 * 140.87557 * 19 18 17 37 37 H 1.08994 * 109.91810 * 333.51090 * 20 16 15 38 38 H 1.08999 * 109.91451 * 94.60787 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 6 2.2381 -6.0258 0.0016 14 6 1.4731 -7.3508 0.0016 15 6 2.4673 -8.5137 0.0028 16 7 1.7329 -9.7860 0.0033 17 6 0.7378 -9.8266 -1.0987 18 6 0.4662 -11.3417 -1.2754 19 6 1.8593 -11.9716 -1.0463 20 6 2.6456 -10.9250 -0.2353 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3906 0.0005 23 1 0.6169 -4.9208 -0.8887 24 1 0.6175 -4.9205 0.8912 25 1 2.8648 -5.9684 -0.8883 26 1 2.8647 -5.9677 0.8917 27 1 0.8461 -7.4084 0.8914 28 1 0.8468 -7.4088 -0.8886 29 1 3.0946 -8.4563 -0.8868 30 1 3.0933 -8.4557 0.8932 31 1 -0.1745 -9.3030 -0.8128 32 1 1.1566 -9.4019 -2.0110 33 1 0.1076 -11.5544 -2.2825 34 1 -0.2447 -11.6958 -0.5288 35 1 2.3515 -12.1586 -2.0007 36 1 1.7670 -12.8981 -0.4796 37 1 3.5146 -10.5920 -0.8026 38 1 2.9643 -11.3510 0.7160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729353389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:32 Heat of formation + Delta-G solvation = -79.853586 kcal Electronic energy + Delta-G solvation = -16665.999888 eV Core-core repulsion = 13927.315919 eV Total energy + Delta-G solvation = -2738.683969 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26194 -39.83002 -36.36543 -35.71605 -33.34789 -32.78028 -29.96761 -29.26960 -26.94527 -24.68135 -22.75747 -21.69759 -21.13287 -20.86791 -19.85090 -17.66254 -17.06517 -16.79729 -16.63582 -16.49097 -15.79785 -15.55828 -14.98240 -14.55178 -14.22165 -13.81046 -13.75874 -13.50116 -13.09750 -12.90679 -12.75533 -12.43335 -12.27404 -12.25329 -12.12679 -12.05192 -11.87504 -11.77464 -11.54018 -11.46297 -11.35874 -10.35580 -10.03454 -9.37776 -8.48591 -5.97833 1.35415 1.40406 1.55030 2.04417 2.29131 2.98320 3.18955 3.29995 3.73411 3.80938 4.02066 4.05565 4.12719 4.25842 4.37432 4.41748 4.51503 4.62733 4.63758 4.72129 4.82908 4.88477 4.91177 4.98868 5.00151 5.07729 5.11086 5.20854 5.33445 5.37218 5.39690 5.47502 5.97652 5.99167 6.08686 6.57453 7.10326 7.54770 8.10252 8.69137 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.074466 B = 0.003289 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.920219 B = 8512.271367 C = 8768.230190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.433 3.567 11 O -0.639 6.639 12 C -0.118 4.118 13 C -0.088 4.088 14 C -0.105 4.105 15 C 0.050 3.950 16 N -0.531 5.531 17 C 0.027 3.973 18 C -0.122 4.122 19 C -0.129 4.129 20 C 0.028 3.972 21 H 0.278 0.722 22 H 0.397 0.603 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -20.494 -2.241 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.222 3.778 11 O -0.528 6.528 12 C -0.158 4.158 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.078 4.078 16 N -0.255 5.255 17 C -0.100 4.100 18 C -0.160 4.160 19 C -0.167 4.167 20 C -0.099 4.099 21 H 0.088 0.912 22 H 0.231 0.769 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.522 -20.374 -1.726 20.503 hybrid contribution 0.493 1.227 -0.704 1.498 sum -1.029 -19.147 -2.429 19.328 Atomic orbital electron populations 1.69680 1.06848 1.29312 1.50260 1.26077 0.96583 1.02494 0.96177 0.84861 0.77974 0.76978 0.78449 1.19851 1.19428 1.19451 1.19730 0.92698 0.84248 1.50043 0.90472 1.42035 1.09397 1.04882 1.64746 1.21199 0.88206 0.86675 0.81739 1.90470 1.16315 1.88404 1.57588 1.21481 0.98933 0.90561 1.04832 1.21115 0.97092 0.92756 1.01741 1.21540 0.97819 0.91680 1.03188 1.22248 0.95788 0.89106 1.00679 1.64822 1.14278 1.02501 1.43922 1.23332 0.96499 0.97827 0.92389 1.22504 0.97258 0.93668 1.02563 1.22406 0.95611 0.98456 1.00183 1.22953 0.94839 0.91914 1.00228 0.91220 0.76869 0.88262 0.88243 0.93252 0.93027 0.90650 0.90944 0.95087 0.91036 0.89701 0.93988 0.89809 0.90627 0.90872 0.90025 0.94121 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -30.38 5.29 -306.99 -1.62 -32.00 16 10 C 0.43 21.27 7.78 87.66 0.68 21.95 16 11 O -0.64 -36.58 15.56 -3.05 -0.05 -36.62 16 12 C -0.12 -4.07 5.70 29.85 0.17 -3.90 16 13 C -0.09 -2.78 4.50 30.59 0.14 -2.64 16 14 C -0.10 -2.49 4.87 30.59 0.15 -2.34 16 15 C 0.05 1.15 5.03 86.30 0.43 1.58 16 16 N -0.53 -11.11 5.40 -883.07 -4.76 -15.88 16 17 C 0.03 0.49 5.10 86.65 0.44 0.93 16 18 C -0.12 -1.70 7.06 31.80 0.22 -1.48 16 19 C -0.13 -1.74 6.93 31.47 0.22 -1.53 16 20 C 0.03 0.50 6.69 86.45 0.58 1.08 16 21 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 22 H 0.40 19.87 7.90 -92.70 -0.73 19.13 16 23 H 0.10 2.98 8.14 -2.39 -0.02 2.97 16 24 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 25 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 26 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.58 6.80 -2.39 -0.02 1.56 16 29 H 0.03 0.73 7.81 -2.39 -0.02 0.71 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.49 7.66 -2.39 -0.02 1.47 16 32 H 0.04 0.78 8.00 -2.39 -0.02 0.76 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.04 0.73 7.57 -2.39 -0.02 0.72 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -67.12 309.70 0.49 -66.64 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.29 Total: 27.91 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 4.32 Total: -5.48 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -6.10 Total: -97.97 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.05 Total: -36.62 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.12 0.49 -66.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729353389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.215 kcal (2) G-P(sol) polarization free energy of solvation -67.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds