Wall clock time and date at job start Sun Mar 29 2020 22:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47300 * 2 1 4 4 H 1.09000 * 109.47270 * 306.79064 * 3 2 1 5 5 C 1.53005 * 109.46976 * 186.79561 * 3 2 1 6 6 C 1.53007 * 109.47080 * 173.26407 * 5 3 2 7 7 C 1.54263 * 110.02802 * 291.70309 * 6 5 3 8 8 C 1.54893 * 104.19619 * 217.10473 * 7 6 5 9 9 C 1.54886 * 102.74386 * 37.94610 * 8 7 6 10 10 C 1.53871 * 110.03065 * 174.54230 * 6 5 3 11 11 C 1.50697 * 109.47411 * 66.79224 * 3 2 1 12 12 O 1.21214 * 120.00052 * 120.00147 * 11 3 2 13 13 O 1.34305 * 120.00056 * 299.99834 * 11 3 2 14 14 C 1.34926 * 117.00050 * 180.02562 * 13 11 3 15 15 H 1.07996 * 119.99919 * 0.02562 * 14 13 11 16 16 C 1.38756 * 119.99834 * 180.02562 * 14 13 11 17 17 N 1.31441 * 120.00214 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47599 * 119.99900 * 18 16 14 21 21 H 1.48505 * 109.47126 * 239.99836 * 18 16 14 22 22 H 1.09001 * 109.46989 * 300.00542 * 1 2 3 23 23 H 1.09000 * 109.46923 * 59.99801 * 1 2 3 24 24 H 1.08998 * 109.47330 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46989 * 239.99458 * 2 1 3 26 26 H 1.09004 * 109.46723 * 119.99746 * 2 1 3 27 27 H 1.09005 * 109.47021 * 293.25919 * 5 3 2 28 28 H 1.08993 * 109.47248 * 53.25811 * 5 3 2 29 29 H 1.08991 * 110.01738 * 53.14632 * 6 5 3 30 30 H 1.09001 * 110.49326 * 335.78964 * 7 6 5 31 31 H 1.09003 * 110.48747 * 98.43299 * 7 6 5 32 32 H 1.08998 * 110.75683 * 279.62926 * 8 7 6 33 33 H 1.09001 * 110.91246 * 156.33368 * 8 7 6 34 34 H 1.09003 * 110.48440 * 203.37532 * 9 8 7 35 35 H 1.09003 * 110.59933 * 80.79262 * 9 8 7 36 36 H 1.09006 * 110.03204 * 238.56685 * 10 6 5 37 37 H 1.09002 * 110.03325 * 359.94732 * 10 6 5 38 38 H 0.96999 * 120.00137 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5809 1.9902 -0.8230 5 6 3.5605 1.4457 -0.1707 6 6 4.0517 2.8850 -0.3391 7 6 3.5677 3.4539 -1.6888 8 6 4.7491 4.3279 -2.1783 9 6 5.9866 3.5030 -1.7455 10 6 5.5897 2.9162 -0.3752 11 6 1.6797 2.1027 1.3058 12 8 2.5525 2.5333 2.0284 13 8 0.3915 2.2141 1.6689 14 6 0.1377 2.8161 2.8495 15 1 0.9533 3.1829 3.4549 16 6 -1.1712 2.9639 3.2857 17 7 -2.1639 2.5179 2.5486 18 14 -1.5226 3.7979 4.9197 19 1 -0.2427 4.2071 5.5520 20 1 -2.3682 4.9971 4.6918 21 1 -2.2362 2.8520 5.8150 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 4.0260 1.0037 0.7103 28 1 3.8284 0.8647 -1.0531 29 1 3.6848 3.5027 0.4805 30 1 3.3720 2.6469 -2.3949 31 1 2.6751 4.0635 -1.5478 32 1 4.7409 5.2998 -1.6850 33 1 4.7231 4.4459 -3.2616 34 1 6.8594 4.1484 -1.6458 35 1 6.1839 2.7039 -2.4601 36 1 5.9692 3.5498 0.4265 37 1 5.9862 1.9061 -0.2718 38 1 -3.0789 2.6215 2.8533 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734053165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:02 Heat of formation + Delta-G solvation = -119.866164 kcal Electronic energy + Delta-G solvation = -18000.635584 eV Core-core repulsion = 15227.923788 eV Total energy + Delta-G solvation = -2772.711796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48173 -37.95507 -35.39602 -34.40213 -32.06157 -30.77411 -28.52379 -27.10593 -25.43056 -23.09604 -21.96912 -20.58408 -19.26392 -19.03330 -17.66420 -16.61333 -15.57064 -15.16360 -14.96431 -14.35211 -14.07312 -13.44150 -13.22135 -13.07782 -12.97012 -12.41964 -11.79777 -11.77415 -11.53340 -11.30303 -11.17051 -10.94603 -10.87601 -10.75256 -10.52167 -10.49250 -10.38135 -10.19735 -10.10873 -9.98551 -9.81665 -9.53156 -8.75961 -8.50856 -6.35617 -4.02238 3.13473 3.22210 3.29257 3.63391 4.00347 4.63593 4.78103 4.85533 4.94842 5.15903 5.27528 5.45709 5.60467 5.65845 5.71690 5.77828 5.81218 5.85996 5.91194 6.03761 6.03868 6.13202 6.20373 6.24260 6.25739 6.41522 6.46141 6.50102 6.55423 6.65690 6.74730 6.84427 6.96631 7.39115 7.50489 8.03759 8.81881 9.14723 9.96187 10.82559 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.006465 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.289869 B = 4330.113405 C = 4856.542891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.075 4.075 4 H 0.092 0.908 5 C -0.089 4.089 6 C -0.098 4.098 7 C -0.122 4.122 8 C -0.125 4.125 9 C -0.124 4.124 10 C -0.117 4.117 11 C 0.405 3.595 12 O -0.554 6.554 13 O -0.210 6.210 14 C -0.382 4.382 15 H 0.093 0.907 16 C 0.042 3.958 17 N -0.866 5.866 18 Si 0.938 3.062 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.098 0.902 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 -1.305 -8.422 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.146 4.146 3 C -0.094 4.094 4 H 0.110 0.890 5 C -0.127 4.127 6 C -0.117 4.117 7 C -0.160 4.160 8 C -0.162 4.162 9 C -0.161 4.161 10 C -0.155 4.155 11 C 0.251 3.749 12 O -0.451 6.451 13 O -0.117 6.117 14 C -0.458 4.458 15 H 0.111 0.889 16 C -0.161 4.161 17 N -0.504 5.504 18 Si 0.763 3.237 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.203 1.203 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.458 -1.206 -8.211 12.583 hybrid contribution -0.263 0.399 0.789 0.923 sum 9.195 -0.807 -7.422 11.844 Atomic orbital electron populations 1.22013 0.94284 1.00974 1.04924 1.21437 0.97484 0.94257 1.01437 1.20979 0.96690 0.96937 0.94814 0.88990 1.21527 0.93221 0.96538 1.01381 1.21915 0.94467 0.97095 0.98192 1.22495 0.97797 0.98897 0.96803 1.22481 0.95145 0.98679 0.99920 1.22353 0.97545 0.98978 0.97247 1.22165 0.95966 1.00611 0.96721 1.23198 0.82670 0.80675 0.88347 1.90515 1.49918 1.49897 1.54751 1.83917 1.24748 1.65539 1.37541 1.21260 0.93316 1.36497 0.94762 0.88912 1.25261 0.94327 0.97188 0.99362 1.69984 0.99249 1.43913 1.37214 0.85690 0.78816 0.78698 0.80512 1.19092 1.20298 1.20292 0.88338 0.93285 0.93832 0.92027 0.92143 0.91367 0.91877 0.88961 0.91781 0.91836 0.91755 0.92128 0.92334 0.92053 0.92146 0.92118 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.60 37.16 0.36 -2.73 16 2 C -0.11 -1.83 5.38 -26.73 -0.14 -1.98 16 3 C -0.07 -1.39 2.24 -91.77 -0.21 -1.59 16 4 H 0.09 1.63 7.34 -51.93 -0.38 1.25 16 5 C -0.09 -1.43 3.45 -26.73 -0.09 -1.52 16 6 C -0.10 -1.56 2.71 -89.50 -0.24 -1.80 16 7 C -0.12 -1.70 5.45 -25.07 -0.14 -1.83 16 8 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 9 C -0.12 -1.41 6.83 -25.08 -0.17 -1.58 16 10 C -0.12 -1.58 6.46 -25.62 -0.17 -1.74 16 11 C 0.40 9.87 6.85 36.00 0.25 10.12 16 12 O -0.55 -14.60 13.36 -19.06 -0.25 -14.86 16 13 O -0.21 -5.87 6.98 -20.70 -0.14 -6.02 16 14 C -0.38 -11.24 9.65 30.92 0.30 -10.94 16 15 H 0.09 2.78 6.86 -52.49 -0.36 2.42 16 16 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 17 N -0.87 -25.10 13.67 55.48 0.76 -24.34 16 18 Si 0.94 21.46 29.55 -169.99 -5.02 16.44 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H 0.10 2.32 5.53 -51.93 -0.29 2.03 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 28 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16 29 H 0.09 1.81 6.08 -51.93 -0.32 1.50 16 30 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -30.93 302.68 -6.95 -37.88 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.33 Total: 2.49 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.52 Total: -16.17 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.76 Total: -24.34 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.40 Total: -20.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.93 -6.95 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734053165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.985 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds