Wall clock time and date at job start Sun Mar 29 2020 22:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46835 * 2 1 4 4 C 1.53009 * 109.47303 * 65.00141 * 3 2 1 5 5 C 1.52998 * 109.47106 * 182.88264 * 4 3 2 6 6 C 1.50699 * 109.47283 * 184.99740 * 3 2 1 7 7 O 1.20823 * 120.00043 * 319.75179 * 6 3 2 8 8 O 1.34231 * 119.99916 * 139.74350 * 6 3 2 9 9 C 1.45202 * 116.99831 * 183.56763 * 8 6 3 10 10 C 1.53005 * 109.47043 * 183.30955 * 9 8 6 11 11 C 1.50696 * 115.55096 * 53.00669 * 10 9 8 12 12 H 1.07994 * 120.00351 * 215.46172 * 11 10 9 13 13 C 1.37877 * 120.00155 * 35.18937 * 11 10 9 14 14 N 1.31517 * 119.99808 * 9.42225 * 13 11 10 15 15 Si 1.86795 * 120.00264 * 189.42315 * 13 11 10 16 16 H 1.48501 * 109.47457 * 59.99975 * 15 13 11 17 17 H 1.48507 * 109.47323 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47055 * 299.99843 * 15 13 11 19 19 C 1.52997 * 117.49882 * 198.68000 * 10 9 8 20 20 C 1.52996 * 117.49434 * 267.34091 * 10 9 8 21 21 H 1.08999 * 109.47050 * 299.99797 * 1 2 3 22 22 H 1.08997 * 109.47309 * 60.00136 * 1 2 3 23 23 H 1.09008 * 109.46810 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47050 * 240.00203 * 2 1 3 25 25 H 1.08997 * 109.47309 * 119.99864 * 2 1 3 26 26 H 1.08998 * 109.47424 * 305.00472 * 3 2 1 27 27 H 1.09000 * 109.46973 * 302.88559 * 4 3 2 28 28 H 1.09000 * 109.46609 * 62.88246 * 4 3 2 29 29 H 1.08994 * 109.47153 * 292.44954 * 5 4 3 30 30 H 1.08996 * 109.47163 * 52.45547 * 5 4 3 31 31 H 1.09006 * 109.46476 * 172.44612 * 5 4 3 32 32 H 1.08994 * 109.47704 * 63.30375 * 9 8 6 33 33 H 1.09007 * 109.47033 * 303.30437 * 9 8 6 34 34 H 0.96999 * 120.00114 * 184.97084 * 14 13 11 35 35 H 1.08994 * 117.50094 * 214.99873 * 19 10 9 36 36 H 1.09002 * 117.49821 * 0.02562 * 19 10 9 37 37 H 1.09001 * 117.50322 * 359.97019 * 20 10 9 38 38 H 1.08995 * 117.49724 * 144.97606 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0823 3.5895 1.2773 6 6 3.5419 1.4444 -0.1238 7 8 4.1986 0.6273 0.4769 8 8 4.1500 2.3539 -0.9015 9 6 5.5918 2.2470 -1.0366 10 6 6.1118 3.4084 -1.8863 11 6 5.6978 4.7837 -1.4302 12 1 5.4936 5.5552 -2.1577 13 6 5.5745 5.0556 -0.0841 14 7 5.9929 4.1810 0.8044 15 14 4.8129 6.6662 0.4775 16 1 3.4231 6.7625 -0.0367 17 1 4.7965 6.7150 1.9617 18 1 5.6142 7.8017 -0.0458 19 6 7.5000 3.2597 -2.5121 20 6 6.2503 3.1754 -3.3920 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6053 1.9816 -0.8417 27 1 0.5522 2.0799 1.4218 28 1 2.1113 1.6183 2.1459 29 1 3.1710 3.6371 1.2981 30 1 1.7153 4.0629 0.3667 31 1 1.6790 4.1105 2.1456 32 1 5.8426 1.3027 -1.5196 33 1 6.0530 2.2840 -0.0496 34 1 5.8413 4.3391 1.7494 35 1 8.1139 4.1566 -2.5939 36 1 8.0427 2.3343 -2.3189 37 1 5.9714 2.1946 -3.7773 38 1 6.0417 4.0168 -4.0527 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:16 Heat of formation + Delta-G solvation = -85.687296 kcal Electronic energy + Delta-G solvation = -18317.551573 eV Core-core repulsion = 15546.321883 eV Total energy + Delta-G solvation = -2771.229689 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71232 -36.98366 -35.75789 -34.80715 -32.16229 -31.56045 -27.64686 -26.18827 -25.26176 -22.61868 -21.85755 -21.19623 -19.17205 -19.09344 -16.93406 -16.52334 -15.58320 -15.20378 -14.69511 -14.41447 -13.86751 -13.81916 -13.57974 -12.84471 -12.49077 -12.19375 -11.93687 -11.78186 -11.70478 -11.34400 -11.24503 -10.90955 -10.81940 -10.71077 -10.55027 -10.46832 -10.36091 -10.29264 -9.79940 -9.43093 -9.22624 -9.09810 -8.74306 -8.10246 -6.03356 -4.08337 3.08269 3.28518 3.34180 3.37220 3.63539 4.38325 4.84473 4.95319 5.05063 5.22423 5.38910 5.47687 5.50679 5.57827 5.78367 5.85720 5.93174 5.96656 6.00432 6.07159 6.22582 6.27393 6.28418 6.35056 6.49252 6.52634 6.64666 6.65750 6.80435 6.84945 7.00078 7.26221 7.44333 7.67026 7.89528 8.34841 8.75763 8.88631 9.52183 10.97953 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.009595 C = 0.007387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.945693 B = 2917.411788 C = 3789.744131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.083 4.083 4 C -0.108 4.108 5 C -0.163 4.163 6 C 0.461 3.539 7 O -0.528 6.528 8 O -0.323 6.323 9 C 0.114 3.886 10 C 0.049 3.951 11 C -0.480 4.480 12 H 0.060 0.940 13 C 0.078 3.922 14 N -0.879 5.879 15 Si 0.886 3.114 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.194 4.194 20 C -0.210 4.210 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.022 0.978 33 H 0.113 0.887 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 -4.841 -0.589 10.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.102 4.102 4 C -0.146 4.146 5 C -0.220 4.220 6 C 0.304 3.696 7 O -0.419 6.419 8 O -0.237 6.237 9 C 0.041 3.959 10 C 0.048 3.952 11 C -0.517 4.517 12 H 0.079 0.921 13 C -0.125 4.125 14 N -0.516 5.516 15 Si 0.713 3.287 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.203 1.203 19 C -0.232 4.232 20 C -0.247 4.247 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.777 -5.038 -0.216 10.122 hybrid contribution -0.167 0.768 0.276 0.833 sum -8.943 -4.269 0.059 9.910 Atomic orbital electron populations 1.21817 0.95188 1.01640 1.02128 1.21428 0.95835 0.94384 1.03190 1.21095 0.89530 0.98464 1.01128 1.21509 1.01110 0.96482 0.95490 1.21900 1.03544 0.95021 1.01547 1.23373 0.91252 0.78498 0.76483 1.90560 1.67284 1.39260 1.44820 1.86494 1.25723 1.50306 1.61205 1.22738 0.75333 0.94349 1.03442 1.18890 0.93594 0.94801 0.87882 1.20370 1.45796 0.93912 0.91610 0.92142 1.24862 0.94276 0.96851 0.96492 1.69849 1.44117 1.36157 1.01507 0.86760 0.80333 0.84042 0.77578 1.19797 1.21147 1.20299 1.22966 0.92163 1.00636 1.07450 1.22957 1.04760 1.00144 0.96824 0.92252 0.92540 0.92588 0.91761 0.90779 0.88486 0.90802 0.91440 0.90973 0.92143 0.93058 0.95937 0.86942 0.92759 0.89824 0.91515 0.91345 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 2 C -0.11 -1.49 5.05 -26.73 -0.13 -1.63 16 3 C -0.08 -1.34 2.30 -91.77 -0.21 -1.55 16 4 C -0.11 -1.63 5.24 -26.73 -0.14 -1.77 16 5 C -0.16 -2.82 9.57 37.16 0.36 -2.47 16 6 C 0.46 9.83 5.91 36.01 0.21 10.04 16 7 O -0.53 -12.47 16.18 -18.75 -0.30 -12.78 16 8 O -0.32 -7.72 9.83 -39.26 -0.39 -8.11 16 9 C 0.11 2.86 4.54 37.16 0.17 3.03 16 10 C 0.05 1.23 2.14 -155.66 -0.33 0.89 16 11 C -0.48 -12.98 8.76 -34.44 -0.30 -13.28 16 12 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 13 C 0.08 2.09 5.18 -17.82 -0.09 2.00 16 14 N -0.88 -24.22 10.72 55.43 0.59 -23.63 16 15 Si 0.89 20.80 29.55 -169.99 -5.02 15.78 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.19 -4.39 9.96 -26.69 -0.27 -4.65 16 20 C -0.21 -4.58 9.92 -26.69 -0.26 -4.85 16 21 H 0.06 0.57 6.50 -51.93 -0.34 0.23 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 26 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.54 7.57 -51.93 -0.39 1.14 16 30 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.11 3.11 5.95 -51.92 -0.31 2.80 16 34 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 35 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -28.92 314.11 -7.44 -36.36 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.41 Total: 3.06 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.65 Total: -15.42 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.59 Total: -23.63 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.69 Total: -20.89 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.92 -7.44 -36.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.326 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds