Wall clock time and date at job start Sun Mar 29 2020 22:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46835 * 2 1 4 4 C 1.53009 * 109.47303 * 65.00141 * 3 2 1 5 5 C 1.52998 * 109.47106 * 182.88264 * 4 3 2 6 6 C 1.50699 * 109.47283 * 184.99740 * 3 2 1 7 7 O 1.20823 * 120.00043 * 319.75179 * 6 3 2 8 8 O 1.34231 * 119.99916 * 139.74350 * 6 3 2 9 9 C 1.45202 * 116.99831 * 183.56763 * 8 6 3 10 10 C 1.53005 * 109.47043 * 183.30955 * 9 8 6 11 11 C 1.50696 * 115.55096 * 53.00669 * 10 9 8 12 12 H 1.07994 * 120.00351 * 215.46172 * 11 10 9 13 13 C 1.37877 * 120.00155 * 35.18937 * 11 10 9 14 14 N 1.31517 * 119.99808 * 9.42225 * 13 11 10 15 15 Si 1.86795 * 120.00264 * 189.42315 * 13 11 10 16 16 H 1.48501 * 109.47457 * 59.99975 * 15 13 11 17 17 H 1.48507 * 109.47323 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47055 * 299.99843 * 15 13 11 19 19 C 1.52997 * 117.49882 * 198.68000 * 10 9 8 20 20 C 1.52996 * 117.49434 * 267.34091 * 10 9 8 21 21 H 1.08999 * 109.47050 * 299.99797 * 1 2 3 22 22 H 1.08997 * 109.47309 * 60.00136 * 1 2 3 23 23 H 1.09008 * 109.46810 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47050 * 240.00203 * 2 1 3 25 25 H 1.08997 * 109.47309 * 119.99864 * 2 1 3 26 26 H 1.08998 * 109.47424 * 305.00472 * 3 2 1 27 27 H 1.09000 * 109.46973 * 302.88559 * 4 3 2 28 28 H 1.09000 * 109.46609 * 62.88246 * 4 3 2 29 29 H 1.08994 * 109.47153 * 292.44954 * 5 4 3 30 30 H 1.08996 * 109.47163 * 52.45547 * 5 4 3 31 31 H 1.09006 * 109.46476 * 172.44612 * 5 4 3 32 32 H 1.08994 * 109.47704 * 63.30375 * 9 8 6 33 33 H 1.09007 * 109.47033 * 303.30437 * 9 8 6 34 34 H 0.96999 * 120.00114 * 184.97084 * 14 13 11 35 35 H 1.08994 * 117.50094 * 214.99873 * 19 10 9 36 36 H 1.09002 * 117.49821 * 0.02562 * 19 10 9 37 37 H 1.09001 * 117.50322 * 359.97019 * 20 10 9 38 38 H 1.08995 * 117.49724 * 144.97606 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0823 3.5895 1.2773 6 6 3.5419 1.4444 -0.1238 7 8 4.1986 0.6273 0.4769 8 8 4.1500 2.3539 -0.9015 9 6 5.5918 2.2470 -1.0366 10 6 6.1118 3.4084 -1.8863 11 6 5.6978 4.7837 -1.4302 12 1 5.4936 5.5552 -2.1577 13 6 5.5745 5.0556 -0.0841 14 7 5.9929 4.1810 0.8044 15 14 4.8129 6.6662 0.4775 16 1 3.4231 6.7625 -0.0367 17 1 4.7965 6.7150 1.9617 18 1 5.6142 7.8017 -0.0458 19 6 7.5000 3.2597 -2.5121 20 6 6.2503 3.1754 -3.3920 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6053 1.9816 -0.8417 27 1 0.5522 2.0799 1.4218 28 1 2.1113 1.6183 2.1459 29 1 3.1710 3.6371 1.2981 30 1 1.7153 4.0629 0.3667 31 1 1.6790 4.1105 2.1456 32 1 5.8426 1.3027 -1.5196 33 1 6.0530 2.2840 -0.0496 34 1 5.8413 4.3391 1.7494 35 1 8.1139 4.1566 -2.5939 36 1 8.0427 2.3343 -2.3189 37 1 5.9714 2.1946 -3.7773 38 1 6.0417 4.0168 -4.0527 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:15 Heat of formation + Delta-G solvation = -99.829417 kcal Electronic energy + Delta-G solvation = -18318.164821 eV Core-core repulsion = 15546.321883 eV Total energy + Delta-G solvation = -2771.842938 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.40747 -38.74286 -37.22852 -36.55294 -34.18619 -32.69266 -29.15133 -27.88605 -27.19179 -23.88194 -23.25189 -22.91917 -21.09802 -20.57092 -18.60948 -18.42418 -17.29873 -16.97502 -16.55583 -15.62437 -15.51693 -15.22584 -14.99781 -14.56447 -13.97158 -13.68010 -13.61852 -13.27410 -13.00052 -12.84995 -12.77253 -12.66165 -12.41075 -12.35787 -12.13922 -11.96988 -11.75913 -11.61879 -11.46467 -11.30452 -11.07937 -10.96359 -10.64586 -10.05745 -8.06069 -6.17122 1.39635 1.41546 1.42476 1.49470 2.02896 2.42902 3.03146 3.55785 3.64781 3.88035 3.88534 4.20934 4.24497 4.32207 4.38288 4.48669 4.50557 4.60794 4.66747 4.76268 4.77422 4.89889 4.93425 4.98309 5.01070 5.14131 5.16928 5.19589 5.27711 5.38858 5.42706 5.47792 5.50958 5.81164 5.91285 6.33430 6.78637 7.04712 7.45535 8.92875 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.009595 C = 0.007387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.945693 B = 2917.411788 C = 3789.744131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.078 4.078 4 C -0.102 4.102 5 C -0.162 4.162 6 C 0.453 3.547 7 O -0.559 6.559 8 O -0.336 6.336 9 C 0.124 3.876 10 C 0.009 3.991 11 C -0.498 4.498 12 H 0.055 0.945 13 C 0.040 3.960 14 N -0.900 5.900 15 Si 0.936 3.064 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.189 4.189 20 C -0.185 4.185 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.258 0.742 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -4.850 -1.122 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.098 4.098 4 C -0.139 4.139 5 C -0.219 4.219 6 C 0.298 3.702 7 O -0.451 6.451 8 O -0.251 6.251 9 C 0.050 3.950 10 C 0.009 3.991 11 C -0.535 4.535 12 H 0.073 0.927 13 C -0.160 4.160 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.227 4.227 20 C -0.223 4.223 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.877 -5.044 -0.765 12.014 hybrid contribution 0.518 0.740 0.428 1.000 sum -10.359 -4.304 -0.336 11.223 Atomic orbital electron populations 1.21795 0.92037 1.03100 1.03167 1.21444 0.98372 0.92106 1.02514 1.21338 0.85327 1.00783 1.02311 1.21540 1.03577 0.94460 0.94307 1.21882 1.00411 0.97088 1.02564 1.24548 0.93344 0.77173 0.75109 1.90532 1.68471 1.40303 1.45821 1.86504 1.25048 1.51488 1.62046 1.22435 0.76181 0.94651 1.01690 1.19031 0.95738 0.94133 0.90222 1.20596 1.46231 0.94794 0.91840 0.92698 1.25457 0.94626 0.99418 0.96523 1.69996 1.44938 1.37590 1.01293 0.85961 0.80006 0.80836 0.77092 1.18846 1.21105 1.19919 1.22970 0.91713 1.01184 1.06824 1.22976 1.03053 1.01419 0.94812 0.91104 0.91543 0.91030 0.92219 0.91853 0.87127 0.86414 0.92460 0.95680 0.92057 0.91034 0.95372 0.90261 0.93302 0.90006 0.90246 0.89423 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.67 71.98 0.70 -1.73 16 2 C -0.11 -2.67 5.05 30.59 0.15 -2.52 16 3 C -0.08 -2.42 2.30 -11.54 -0.03 -2.45 16 4 C -0.10 -2.86 5.24 30.60 0.16 -2.70 16 5 C -0.16 -5.45 9.57 71.98 0.69 -4.76 16 6 C 0.45 19.54 5.91 71.24 0.42 19.96 16 7 O -0.56 -27.11 16.18 21.97 0.36 -26.75 16 8 O -0.34 -16.35 9.83 -51.43 -0.51 -16.86 16 9 C 0.12 6.34 4.54 71.98 0.33 6.66 16 10 C 0.01 0.46 2.14 -52.93 -0.11 0.35 16 11 C -0.50 -27.15 8.76 25.60 0.22 -26.92 16 12 H 0.05 2.97 7.83 -2.91 -0.02 2.94 16 13 C 0.04 2.18 5.18 84.65 0.44 2.62 16 14 N -0.90 -51.10 10.72 21.45 0.23 -50.87 16 15 Si 0.94 42.88 29.55 68.60 2.03 44.91 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.19 -8.42 9.96 30.62 0.30 -8.11 16 20 C -0.19 -7.84 9.92 30.62 0.30 -7.54 16 21 H 0.07 1.04 6.50 -2.39 -0.02 1.02 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.72 8.03 -2.39 -0.02 1.70 16 26 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.12 2.32 6.43 -2.39 -0.02 2.31 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 30 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.08 4.58 5.95 -2.38 -0.01 4.56 16 34 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 35 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -63.66 314.11 6.70 -56.97 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 1.01 Total: 19.72 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 3.58 Total: -27.12 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.23 Total: -50.87 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.15 Total: -43.61 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -63.66 6.70 -56.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.863 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds