Wall clock time and date at job start Sun Mar 29 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47259 * 2 1 4 4 C 1.52996 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47341 * 54.99854 * 4 3 2 6 6 C 1.52998 * 109.47110 * 295.00037 * 4 3 2 7 7 C 1.50700 * 109.47466 * 174.99605 * 4 3 2 8 8 O 1.20828 * 119.99846 * 0.02562 * 7 4 3 9 9 O 1.34231 * 120.00204 * 179.97438 * 7 4 3 10 10 C 1.45203 * 116.99980 * 180.02562 * 9 7 4 11 11 C 1.52999 * 109.46844 * 180.02562 * 10 9 7 12 12 C 1.50700 * 115.54887 * 65.11323 * 11 10 9 13 13 H 1.08005 * 119.99814 * 266.10968 * 12 11 10 14 14 C 1.37878 * 120.00303 * 86.10879 * 12 11 10 15 15 N 1.31517 * 119.99879 * 353.70611 * 14 12 11 16 16 Si 1.86797 * 120.00117 * 173.70573 * 14 12 11 17 17 H 1.48504 * 109.47150 * 59.99830 * 16 14 12 18 18 H 1.48500 * 109.47247 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47183 * 299.99792 * 16 14 12 20 20 C 1.52996 * 117.50133 * 279.43973 * 11 10 9 21 21 C 1.53001 * 117.49839 * 210.77889 * 11 10 9 22 22 H 1.09002 * 109.47444 * 300.00674 * 1 2 3 23 23 H 1.09004 * 109.47300 * 59.99680 * 1 2 3 24 24 H 1.08994 * 109.47454 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46743 * 119.99987 * 2 1 3 26 26 H 1.08995 * 109.46892 * 239.99650 * 2 1 3 27 27 H 1.09005 * 109.47072 * 299.99415 * 3 2 1 28 28 H 1.08995 * 109.47454 * 59.99994 * 3 2 1 29 29 H 1.08999 * 109.47346 * 60.00176 * 6 4 3 30 30 H 1.09000 * 109.47544 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.47010 * 299.99579 * 6 4 3 32 32 H 1.08997 * 109.47201 * 300.00767 * 10 9 7 33 33 H 1.09004 * 109.46822 * 60.00810 * 10 9 7 34 34 H 0.96995 * 120.00051 * 180.02562 * 15 14 12 35 35 H 1.09000 * 117.50051 * 359.97438 * 20 11 10 36 36 H 1.08999 * 117.49853 * 145.02249 * 20 11 10 37 37 H 1.08997 * 117.49857 * 214.98626 * 21 11 10 38 38 H 1.09002 * 117.49977 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0805 0.8326 1.3064 7 6 4.0723 2.8578 -0.1246 8 8 3.2871 3.7728 -0.2037 9 8 5.3920 3.1022 -0.1460 10 6 5.8037 4.4894 -0.2668 11 6 7.3316 4.5690 -0.2746 12 6 8.0099 3.9268 -1.4571 13 1 8.3541 2.9050 -1.3929 14 6 8.1913 4.6434 -2.6209 15 7 7.6646 5.8422 -2.7438 16 14 9.1850 3.9116 -4.0232 17 1 8.5478 2.6487 -4.4751 18 1 9.2314 4.8749 -5.1524 19 1 10.5663 3.6298 -3.5566 20 6 8.0494 4.5004 1.0748 21 6 7.9764 5.8260 0.3129 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8932 -0.5138 0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 3.7172 -0.1911 1.3960 30 1 5.1705 0.8322 1.3058 31 1 3.7176 1.4220 2.1484 32 1 5.4138 4.9044 -1.1962 33 1 5.4141 5.0588 0.5771 34 1 7.7918 6.3462 -3.5627 35 1 7.4332 4.3989 1.9681 36 1 9.0125 3.9910 1.1072 37 1 8.8915 6.1882 -0.1557 38 1 7.3122 6.5964 0.7045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:29 Heat of formation + Delta-G solvation = -91.632462 kcal Electronic energy + Delta-G solvation = -17467.138611 eV Core-core repulsion = 14695.651120 eV Total energy + Delta-G solvation = -2771.487491 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90100 -37.05670 -36.00215 -35.09133 -32.06036 -31.94287 -27.02881 -26.59727 -25.33835 -23.85356 -21.34361 -21.04673 -19.48536 -19.22428 -16.88434 -16.52700 -15.75473 -15.41157 -15.13537 -14.60655 -14.07348 -13.96224 -13.42786 -13.03435 -12.79229 -12.36156 -12.10579 -11.90372 -11.81203 -11.59984 -11.22836 -11.00337 -10.96457 -10.87781 -10.76194 -10.55586 -10.54294 -10.28049 -9.87634 -9.80903 -9.49049 -8.82143 -8.46008 -8.19973 -6.06415 -4.11780 2.82790 3.30182 3.35224 3.37487 3.38725 4.39308 4.75009 4.87870 4.90417 5.14746 5.21011 5.24028 5.32142 5.38276 5.62284 5.65778 5.75237 5.81430 5.88220 5.95440 6.00322 6.07291 6.12622 6.26170 6.31479 6.34778 6.38046 6.54813 6.68078 6.74470 7.03646 7.30065 7.37651 7.49465 7.86567 8.37487 8.50532 8.89614 9.53942 11.02994 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.005725 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.323491 B = 4889.279625 C = 5330.703842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.085 4.085 5 H 0.106 0.894 6 C -0.144 4.144 7 C 0.455 3.545 8 O -0.525 6.525 9 O -0.336 6.336 10 C 0.115 3.885 11 C 0.038 3.962 12 C -0.490 4.490 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.205 4.205 21 C -0.145 4.145 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 -9.474 5.972 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.104 4.104 5 H 0.124 0.876 6 C -0.201 4.201 7 C 0.299 3.701 8 O -0.416 6.416 9 O -0.251 6.251 10 C 0.042 3.958 11 C 0.037 3.963 12 C -0.528 4.528 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.518 5.518 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.242 4.242 21 C -0.183 4.183 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.845 -8.999 5.809 13.891 hybrid contribution 0.467 -0.009 -0.902 1.016 sum -8.378 -9.007 4.908 13.244 Atomic orbital electron populations 1.21759 0.95841 1.01350 1.01969 1.21586 0.95873 0.96540 1.02256 1.21507 0.92277 0.96827 1.03622 1.21024 0.96646 0.91150 1.01620 0.87647 1.21791 1.02573 1.00667 0.95071 1.23611 0.81899 0.91992 0.72638 1.90597 1.57387 1.47078 1.46493 1.86516 1.23391 1.33700 1.81506 1.22879 0.96528 0.76289 1.00111 1.18771 0.87550 0.98220 0.91742 1.20347 1.37866 0.98761 0.95788 0.91931 1.25016 0.95285 0.94907 0.98239 1.69993 1.43218 1.11542 1.27080 0.86646 0.80824 0.78950 0.81539 1.20151 1.21276 1.20118 1.23004 1.02362 1.02803 0.96065 1.22531 1.02563 0.90122 1.03039 0.92747 0.92694 0.92876 0.91609 0.91839 0.91007 0.91270 0.91352 0.90889 0.92414 0.90750 0.94455 0.92856 0.91595 0.90080 0.89427 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.20 5.69 -26.73 -0.15 -1.35 16 3 C -0.10 -1.31 4.03 -26.73 -0.11 -1.41 16 4 C -0.09 -1.21 2.83 -91.77 -0.26 -1.47 16 5 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 6 C -0.14 -1.72 8.88 37.16 0.33 -1.39 16 7 C 0.46 8.89 7.26 36.01 0.26 9.16 16 8 O -0.53 -11.52 15.67 -18.75 -0.29 -11.82 16 9 O -0.34 -7.47 10.06 -39.26 -0.39 -7.87 16 10 C 0.12 2.79 5.29 37.16 0.20 2.99 16 11 C 0.04 0.95 1.62 -155.66 -0.25 0.69 16 12 C -0.49 -13.43 8.77 -34.44 -0.30 -13.73 16 13 H 0.06 1.71 7.82 -52.48 -0.41 1.30 16 14 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 15 N -0.88 -25.05 12.88 55.43 0.71 -24.34 16 16 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.21 -4.50 9.96 -26.70 -0.27 -4.77 16 21 C -0.15 -3.40 9.37 -26.69 -0.25 -3.65 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.57 6.57 -51.93 -0.34 0.23 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.64 6.57 -51.93 -0.34 0.30 16 30 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.99 8.13 -51.93 -0.42 1.57 16 33 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -29.80 319.57 -7.27 -37.06 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.55 Total: 0.15 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.53 Total: -14.10 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.71 Total: -24.34 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.69 Total: -19.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.80 -7.27 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.572 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds