Wall clock time and date at job start Sun Mar 29 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47259 * 2 1 4 4 C 1.52996 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47341 * 54.99854 * 4 3 2 6 6 C 1.52998 * 109.47110 * 295.00037 * 4 3 2 7 7 C 1.50700 * 109.47466 * 174.99605 * 4 3 2 8 8 O 1.20828 * 119.99846 * 0.02562 * 7 4 3 9 9 O 1.34231 * 120.00204 * 179.97438 * 7 4 3 10 10 C 1.45203 * 116.99980 * 180.02562 * 9 7 4 11 11 C 1.52999 * 109.46844 * 180.02562 * 10 9 7 12 12 C 1.50700 * 115.54887 * 65.11323 * 11 10 9 13 13 H 1.08005 * 119.99814 * 266.10968 * 12 11 10 14 14 C 1.37878 * 120.00303 * 86.10879 * 12 11 10 15 15 N 1.31517 * 119.99879 * 353.70611 * 14 12 11 16 16 Si 1.86797 * 120.00117 * 173.70573 * 14 12 11 17 17 H 1.48504 * 109.47150 * 59.99830 * 16 14 12 18 18 H 1.48500 * 109.47247 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47183 * 299.99792 * 16 14 12 20 20 C 1.52996 * 117.50133 * 279.43973 * 11 10 9 21 21 C 1.53001 * 117.49839 * 210.77889 * 11 10 9 22 22 H 1.09002 * 109.47444 * 300.00674 * 1 2 3 23 23 H 1.09004 * 109.47300 * 59.99680 * 1 2 3 24 24 H 1.08994 * 109.47454 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46743 * 119.99987 * 2 1 3 26 26 H 1.08995 * 109.46892 * 239.99650 * 2 1 3 27 27 H 1.09005 * 109.47072 * 299.99415 * 3 2 1 28 28 H 1.08995 * 109.47454 * 59.99994 * 3 2 1 29 29 H 1.08999 * 109.47346 * 60.00176 * 6 4 3 30 30 H 1.09000 * 109.47544 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.47010 * 299.99579 * 6 4 3 32 32 H 1.08997 * 109.47201 * 300.00767 * 10 9 7 33 33 H 1.09004 * 109.46822 * 60.00810 * 10 9 7 34 34 H 0.96995 * 120.00051 * 180.02562 * 15 14 12 35 35 H 1.09000 * 117.50051 * 359.97438 * 20 11 10 36 36 H 1.08999 * 117.49853 * 145.02249 * 20 11 10 37 37 H 1.08997 * 117.49857 * 214.98626 * 21 11 10 38 38 H 1.09002 * 117.49977 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0805 0.8326 1.3064 7 6 4.0723 2.8578 -0.1246 8 8 3.2871 3.7728 -0.2037 9 8 5.3920 3.1022 -0.1460 10 6 5.8037 4.4894 -0.2668 11 6 7.3316 4.5690 -0.2746 12 6 8.0099 3.9268 -1.4571 13 1 8.3541 2.9050 -1.3929 14 6 8.1913 4.6434 -2.6209 15 7 7.6646 5.8422 -2.7438 16 14 9.1850 3.9116 -4.0232 17 1 8.5478 2.6487 -4.4751 18 1 9.2314 4.8749 -5.1524 19 1 10.5663 3.6298 -3.5566 20 6 8.0494 4.5004 1.0748 21 6 7.9764 5.8260 0.3129 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8932 -0.5138 0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 3.7172 -0.1911 1.3960 30 1 5.1705 0.8322 1.3058 31 1 3.7176 1.4220 2.1484 32 1 5.4138 4.9044 -1.1962 33 1 5.4141 5.0588 0.5771 34 1 7.7918 6.3462 -3.5627 35 1 7.4332 4.3989 1.9681 36 1 9.0125 3.9910 1.1072 37 1 8.8915 6.1882 -0.1557 38 1 7.3122 6.5964 0.7045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:29 Heat of formation + Delta-G solvation = -106.481214 kcal Electronic energy + Delta-G solvation = -17467.782501 eV Core-core repulsion = 14695.651120 eV Total energy + Delta-G solvation = -2772.131381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.51276 -38.76415 -37.32755 -36.71531 -34.03323 -32.97273 -28.82092 -27.54368 -27.36759 -25.09197 -23.01095 -22.24396 -21.20764 -20.78360 -18.53473 -18.31842 -17.36905 -17.02103 -16.61743 -16.19535 -15.70711 -14.98589 -14.89878 -14.45859 -14.06105 -13.79471 -13.59014 -13.34227 -13.11894 -12.91944 -12.81111 -12.72776 -12.41919 -12.20763 -12.10428 -11.88196 -11.80717 -11.67280 -11.60544 -11.40440 -11.18121 -10.79290 -10.49484 -10.09216 -8.14715 -6.26349 1.25805 1.42296 1.43274 1.51075 1.84307 2.41820 3.14059 3.39643 3.67130 3.81479 3.91869 4.12766 4.25374 4.34140 4.35567 4.37168 4.46392 4.63325 4.64492 4.78121 4.85377 4.87641 4.94596 4.95527 5.03166 5.12755 5.16641 5.22235 5.32228 5.43223 5.45148 5.51786 5.57145 5.72145 5.74242 6.34558 6.78938 6.84635 7.42549 8.94125 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.005725 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.323491 B = 4889.279625 C = 5330.703842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.079 4.079 5 H 0.119 0.881 6 C -0.139 4.139 7 C 0.448 3.552 8 O -0.555 6.555 9 O -0.345 6.345 10 C 0.127 3.873 11 C 0.003 3.997 12 C -0.505 4.505 13 H 0.056 0.944 14 C 0.022 3.978 15 N -0.911 5.911 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.267 1.267 20 C -0.176 4.176 21 C -0.147 4.147 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.261 0.739 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 -11.564 6.711 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.098 4.098 5 H 0.137 0.863 6 C -0.196 4.196 7 C 0.293 3.707 8 O -0.446 6.446 9 O -0.260 6.260 10 C 0.054 3.946 11 C 0.003 3.997 12 C -0.543 4.543 13 H 0.075 0.925 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.192 1.192 20 C -0.213 4.213 21 C -0.185 4.185 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.938 -11.107 6.561 15.694 hybrid contribution 0.437 0.638 -1.106 1.350 sum -8.500 -10.469 5.455 14.547 Atomic orbital electron populations 1.21770 0.95228 1.02327 1.01692 1.21572 0.96374 0.94219 1.03461 1.21505 0.90944 0.98923 1.02438 1.21252 0.97606 0.87415 1.03544 0.86308 1.21810 1.01929 1.02422 0.93417 1.24842 0.80633 0.94077 0.71154 1.90577 1.57663 1.48636 1.47768 1.86530 1.25269 1.32309 1.81929 1.22487 0.96164 0.77573 0.98425 1.18877 0.87978 0.99784 0.93056 1.20611 1.37993 0.98671 0.96999 0.92549 1.25749 0.96194 0.95290 1.00581 1.70109 1.44371 1.12733 1.27648 0.85681 0.79652 0.78178 0.78584 1.19734 1.21084 1.19195 1.23011 1.02276 1.00757 0.95219 1.22469 1.01889 0.90713 1.03404 0.92735 0.93385 0.91245 0.89858 0.91104 0.92939 0.91862 0.87853 0.91875 0.92419 0.94539 0.93654 0.93004 0.89131 0.89458 0.91136 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.59 16 2 C -0.12 -1.94 5.69 30.59 0.17 -1.77 16 3 C -0.10 -2.37 4.03 30.59 0.12 -2.25 16 4 C -0.08 -2.13 2.83 -11.54 -0.03 -2.16 16 5 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 6 C -0.14 -2.96 8.88 71.98 0.64 -2.32 16 7 C 0.45 17.53 7.26 71.24 0.52 18.04 16 8 O -0.55 -24.86 15.67 21.96 0.34 -24.51 16 9 O -0.35 -15.43 10.06 -51.42 -0.52 -15.94 16 10 C 0.13 6.29 5.29 71.98 0.38 6.67 16 11 C 0.00 0.18 1.62 -52.93 -0.09 0.09 16 12 C -0.51 -27.87 8.77 25.60 0.22 -27.64 16 13 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 14 C 0.02 1.22 5.38 84.65 0.46 1.68 16 15 N -0.91 -52.73 12.88 21.45 0.28 -52.46 16 16 Si 0.95 43.43 29.54 68.60 2.03 45.45 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C -0.18 -7.45 9.96 30.62 0.30 -7.15 16 21 C -0.15 -6.89 9.37 30.62 0.29 -6.60 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 1.09 6.57 -2.39 -0.02 1.08 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.43 7.96 -2.38 -0.02 1.41 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.50 6.57 -2.39 -0.02 1.48 16 30 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 2.04 8.13 -2.39 -0.02 2.02 16 33 H 0.05 2.11 8.09 -2.38 -0.02 2.09 16 34 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.09 3.38 8.14 -2.39 -0.02 3.37 16 36 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -64.68 319.57 6.84 -57.84 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.01 Total: 14.62 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.70 Total: -25.00 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.28 Total: -52.46 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.17 Total: -40.46 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -64.68 6.84 -57.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.638 kcal (2) G-P(sol) polarization free energy of solvation -64.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds