Wall clock time and date at job start Sun Mar 29 2020 22:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99807 * 2 1 4 4 H 1.48501 * 109.46917 * 269.99817 * 3 2 1 5 5 H 1.48507 * 109.47182 * 29.99943 * 3 2 1 6 6 H 1.48502 * 109.47416 * 149.99669 * 3 2 1 7 7 C 1.37877 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47003 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.47372 * 180.02562 * 11 10 9 13 13 C 1.34230 * 117.00173 * 180.02562 * 12 11 10 14 14 O 1.20818 * 119.99983 * 0.27497 * 13 12 11 15 15 C 1.50706 * 119.99763 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.46573 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46997 * 180.02562 * 16 15 13 18 18 C 1.53787 * 113.61211 * 274.14009 * 17 16 15 19 19 C 1.53953 * 87.01614 * 220.04422 * 18 17 16 20 20 C 1.53770 * 113.61593 * 176.53186 * 17 16 15 21 21 H 0.96993 * 120.00319 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46554 * 60.00162 * 9 7 2 23 23 H 1.08998 * 109.47254 * 300.00237 * 9 7 2 24 24 H 1.08997 * 109.47391 * 60.00415 * 10 9 7 25 25 H 1.08998 * 109.47405 * 300.00262 * 10 9 7 26 26 H 1.09003 * 109.46945 * 60.00578 * 11 10 9 27 27 H 1.08998 * 109.47020 * 300.00285 * 11 10 9 28 28 H 1.09000 * 109.47161 * 299.99883 * 15 13 12 29 29 H 1.09001 * 109.46740 * 60.00026 * 15 13 12 30 30 H 1.09000 * 109.47486 * 299.99934 * 16 15 13 31 31 H 1.09001 * 109.47362 * 60.00657 * 16 15 13 32 32 H 1.08998 * 112.84682 * 45.33228 * 17 16 15 33 33 H 1.08996 * 113.61334 * 334.56317 * 18 17 16 34 34 H 1.08998 * 113.61327 * 105.46988 * 18 17 16 35 35 H 1.08997 * 113.53988 * 270.81322 * 19 18 17 36 36 H 1.09003 * 113.66384 * 139.93346 * 19 18 17 37 37 H 1.09001 * 113.61377 * 254.52911 * 20 17 16 38 38 H 1.08997 * 113.61844 * 25.34687 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 8 2.4239 -6.0907 0.0024 13 6 1.9109 -7.3311 0.0023 14 8 0.7132 -7.4894 -0.0030 15 6 2.8291 -8.5262 0.0021 16 6 1.9957 -9.8093 0.0028 17 6 2.9278 -11.0227 0.0032 18 6 3.3835 -11.4499 -1.4021 19 6 3.2074 -12.9044 -0.9294 20 6 2.1877 -12.3679 0.0891 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5574 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 2.8727 -3.6039 0.8909 25 1 2.8714 -3.6047 -0.8890 26 1 0.8534 -5.0450 -0.8878 27 1 0.8541 -5.0447 0.8922 28 1 3.4578 -8.5012 -0.8879 29 1 3.4580 -8.5013 0.8921 30 1 1.3673 -9.8341 0.8930 31 1 1.3665 -9.8344 -0.8870 32 1 3.7456 -10.9279 0.7174 33 1 2.6909 -11.1607 -2.1924 34 1 4.4169 -11.1845 -1.6254 35 1 4.1026 -13.3247 -0.4711 36 1 2.7691 -13.5592 -1.6826 37 1 2.2571 -12.8427 1.0678 38 1 1.1671 -12.3299 -0.2915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750393030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:19 Heat of formation + Delta-G solvation = -105.491904 kcal Electronic energy + Delta-G solvation = -16334.029247 eV Core-core repulsion = 13561.940765 eV Total energy + Delta-G solvation = -2772.088481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.27542 -39.10641 -36.48795 -33.97815 -33.05592 -31.65404 -27.65343 -26.42922 -25.84763 -23.45593 -22.31402 -20.48623 -20.16552 -19.69901 -17.39945 -16.55806 -16.49163 -15.90653 -15.73833 -14.85897 -14.57474 -14.46996 -13.68869 -13.25236 -12.91562 -12.72699 -12.44709 -12.17488 -11.94892 -11.87425 -11.61024 -11.25107 -10.96529 -10.85209 -10.65752 -10.61785 -10.55728 -10.41114 -10.34514 -10.22930 -9.70740 -9.48386 -9.15742 -8.38529 -6.03255 -4.06321 2.40325 2.95352 3.31177 3.37260 3.40913 4.26961 4.34489 4.42294 4.45647 4.55701 4.77885 4.95251 5.05755 5.26848 5.32625 5.40281 5.41673 5.47352 5.49680 5.59630 5.61605 5.63334 5.66124 5.79256 5.97749 6.03261 6.04264 6.24212 6.54970 6.55345 6.88286 7.00319 7.60763 7.71921 7.94966 7.99342 8.36441 9.00019 9.57919 11.08248 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.083709 B = 0.002925 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.410263 B = 9571.570244 C = 9769.490148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.360 6.360 13 C 0.454 3.546 14 O -0.515 6.515 15 C -0.113 4.113 16 C -0.099 4.099 17 C -0.112 4.112 18 C -0.140 4.140 19 C -0.144 4.144 20 C -0.137 4.137 21 H 0.261 0.739 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.943 -23.176 -0.635 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.005 4.005 12 O -0.277 6.277 13 C 0.297 3.703 14 O -0.404 6.404 15 C -0.151 4.151 16 C -0.137 4.137 17 C -0.130 4.130 18 C -0.178 4.178 19 C -0.182 4.182 20 C -0.175 4.175 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.420 -23.052 -0.633 23.938 hybrid contribution 0.236 1.049 0.001 1.075 sum 6.656 -22.003 -0.632 22.997 Atomic orbital electron populations 1.69966 1.06093 1.26764 1.50577 1.25038 0.94887 0.99385 0.95213 0.86539 0.79797 0.83209 0.78134 1.20607 1.21190 1.19813 1.21177 0.93122 0.90691 1.50953 0.92428 1.19055 0.93857 0.90784 0.97669 1.21757 0.99903 0.91066 1.01920 1.23480 0.91239 0.83749 1.02064 1.86501 1.42715 1.15366 1.83120 1.23733 0.88782 0.85193 0.72570 1.90649 1.17210 1.86942 1.45607 1.21393 0.98106 0.89919 1.05650 1.21427 0.97259 0.91166 1.03810 1.22582 0.98561 0.93892 0.97944 1.23050 1.01677 0.96191 0.96840 1.22840 0.99535 0.96669 0.99116 1.22932 0.98783 0.96196 0.99578 0.92889 0.96252 0.96237 0.92174 0.92182 0.91597 0.91606 0.87880 0.87933 0.90876 0.90877 0.89017 0.89967 0.91443 0.90323 0.91588 0.91559 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 11 C 0.07 1.28 5.47 37.16 0.20 1.49 16 12 O -0.36 -6.13 10.22 -39.26 -0.40 -6.53 16 13 C 0.45 6.87 7.96 36.01 0.29 7.15 16 14 O -0.52 -9.29 15.73 -18.74 -0.29 -9.58 16 15 C -0.11 -1.13 5.81 -27.88 -0.16 -1.29 16 16 C -0.10 -0.93 4.33 -26.73 -0.12 -1.04 16 17 C -0.11 -0.82 3.64 -89.81 -0.33 -1.14 16 18 C -0.14 -0.97 7.65 -25.83 -0.20 -1.17 16 19 C -0.14 -0.92 8.09 -25.83 -0.21 -1.13 16 20 C -0.14 -0.96 7.64 -25.92 -0.20 -1.16 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.75 7.83 -51.93 -0.41 0.35 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -31.43 319.57 -8.28 -39.70 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -6.70 Total: -4.88 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.42 Total: -13.88 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.70 Total: -16.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.43 -8.28 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750393030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.789 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds