Wall clock time and date at job start Sun Mar 29 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.52995 * 109.47577 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46702 * 295.00088 * 7 6 5 9 9 O 1.21207 * 120.00361 * 359.97438 * 8 7 6 10 10 O 1.34317 * 119.99970 * 180.02562 * 8 7 6 11 11 C 1.34917 * 116.99893 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00211 * 0.02562 * 11 10 8 13 13 C 1.38753 * 119.99981 * 179.97438 * 11 10 8 14 14 N 1.31439 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00032 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46850 * 90.00201 * 15 13 11 17 17 H 1.48500 * 109.46668 * 210.00114 * 15 13 11 18 18 H 1.48497 * 109.46995 * 330.00118 * 15 13 11 19 19 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 20 20 C 1.52997 * 109.47415 * 59.99860 * 19 6 5 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 28 28 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 29 29 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 30 30 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 31 31 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 32 32 H 1.08998 * 109.47220 * 54.99171 * 7 6 5 33 33 H 1.08991 * 109.47712 * 174.99863 * 7 6 5 34 34 H 0.97001 * 120.00444 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.46986 * 299.99742 * 19 6 5 36 36 H 1.09001 * 109.47601 * 180.02562 * 19 6 5 37 37 H 1.09001 * 109.46922 * 180.02562 * 20 19 6 38 38 H 1.09000 * 109.47140 * 59.99976 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.6105 -1.4405 -0.0002 8 6 6.1134 -2.2551 -1.1641 9 8 5.3262 -2.7844 -1.9186 10 8 7.4341 -2.3955 -1.3649 11 6 7.8171 -3.1377 -2.4244 12 1 7.0736 -3.5869 -3.0661 13 6 9.1662 -3.3230 -2.6903 14 7 10.0711 -2.7750 -1.9102 15 14 9.6965 -4.3501 -4.1578 16 1 9.8364 -3.4753 -5.3496 17 1 11.0000 -4.9977 -3.8634 18 1 8.6748 -5.3935 -4.4268 19 6 3.5705 -0.7204 1.2490 20 6 2.0405 -0.7209 1.2493 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6768 -0.2074 -2.1392 29 1 3.9330 0.3071 -1.2497 30 1 3.9334 -1.2342 -2.1397 31 1 3.7176 -2.4693 0.0000 32 1 5.9732 -0.4166 -0.0899 33 1 5.9742 -1.8745 0.9311 34 1 11.0143 -2.9048 -2.0958 35 1 3.9335 0.3074 1.2488 36 1 3.9345 -1.2336 2.1390 37 1 1.6772 -0.2067 2.1391 38 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751832657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:28 Heat of formation + Delta-G solvation = -120.406805 kcal Electronic energy + Delta-G solvation = -17760.777483 eV Core-core repulsion = 14988.042243 eV Total energy + Delta-G solvation = -2772.735240 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77827 -38.60689 -35.41137 -33.74098 -32.08020 -30.58479 -29.12858 -27.33413 -25.67043 -24.23897 -22.53677 -20.84581 -19.40477 -18.32019 -17.64374 -16.34358 -15.22666 -14.87458 -14.72988 -14.55987 -14.34873 -13.89479 -13.67964 -13.20086 -12.91967 -12.20847 -12.13638 -11.86180 -11.78982 -11.74812 -11.49705 -11.23191 -11.16320 -11.02188 -10.74408 -10.58662 -10.39381 -10.31439 -9.95426 -9.87654 -9.74020 -9.66348 -8.78918 -8.51716 -6.35428 -4.03008 3.15043 3.21686 3.27909 3.63148 4.00239 4.57879 4.72011 4.83667 4.84756 5.15803 5.22924 5.36077 5.40031 5.48500 5.55483 5.64740 5.71448 5.76922 5.77886 5.82676 5.94624 5.99789 6.04460 6.09650 6.10640 6.19784 6.27231 6.34589 6.40766 6.46068 6.57706 6.82964 6.84139 6.97950 7.46091 8.02516 8.81198 9.13898 9.95211 10.83041 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.053554 B = 0.004811 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.714362 B = 5818.535664 C = 6043.490765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.144 4.144 4 C -0.104 4.104 5 C -0.122 4.122 6 C -0.069 4.069 7 C -0.101 4.101 8 C 0.399 3.601 9 O -0.554 6.554 10 O -0.219 6.219 11 C -0.381 4.381 12 H 0.094 0.906 13 C 0.041 3.959 14 N -0.868 5.868 15 Si 0.941 3.059 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.117 4.117 20 C -0.105 4.105 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.268 0.732 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.120 6.333 5.583 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.160 4.160 6 C -0.087 4.087 7 C -0.139 4.139 8 C 0.245 3.755 9 O -0.451 6.451 10 O -0.127 6.127 11 C -0.457 4.457 12 H 0.112 0.888 13 C -0.163 4.163 14 N -0.506 5.506 15 Si 0.766 3.234 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.154 4.154 20 C -0.142 4.142 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.067 6.206 5.406 16.297 hybrid contribution 0.367 -0.480 -0.668 0.901 sum -13.700 5.726 4.738 15.586 Atomic orbital electron populations 1.21864 0.95176 1.01477 1.01248 1.20565 0.94660 0.95605 0.95884 1.21970 1.01890 0.95286 1.00983 1.21553 0.96294 1.00011 0.96257 1.21760 0.94583 1.00111 0.99504 1.20889 0.92786 1.00388 0.94658 1.21191 0.95762 1.00435 0.96527 1.23274 0.82601 0.82498 0.87103 1.90504 1.56888 1.49439 1.48282 1.83891 1.22274 1.60960 1.45546 1.21199 0.92035 1.28515 1.03972 0.88812 1.25314 0.94562 0.97593 0.98818 1.69993 1.01153 1.42247 1.37171 0.85706 0.78227 0.79455 0.79997 1.19955 1.20389 1.19165 1.21648 0.95289 1.00858 0.97617 1.21553 0.95673 1.00241 0.96762 0.93044 0.92919 0.92847 0.91703 0.93077 0.93227 0.92142 0.92525 0.92557 0.89557 0.90640 0.89417 0.89368 0.92200 0.91675 0.92109 0.92399 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.48 37.16 0.31 -1.03 16 2 C -0.07 -0.74 0.77 -154.51 -0.12 -0.86 16 3 C -0.14 -1.51 7.78 37.16 0.29 -1.22 16 4 C -0.10 -1.36 4.73 -26.73 -0.13 -1.49 16 5 C -0.12 -1.92 4.67 -26.73 -0.12 -2.05 16 6 C -0.07 -1.07 1.84 -90.62 -0.17 -1.24 16 7 C -0.10 -1.84 5.29 -27.88 -0.15 -1.99 16 8 C 0.40 9.85 7.62 36.01 0.27 10.13 16 9 O -0.55 -14.61 13.20 -19.05 -0.25 -14.87 16 10 O -0.22 -6.40 9.75 -20.71 -0.20 -6.61 16 11 C -0.38 -11.47 9.64 30.92 0.30 -11.18 16 12 H 0.09 2.84 6.86 -52.49 -0.36 2.48 16 13 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 14 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 15 Si 0.94 21.68 29.55 -169.99 -5.02 16.66 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 C -0.12 -1.43 4.93 -26.73 -0.13 -1.56 16 20 C -0.10 -1.16 4.73 -26.73 -0.13 -1.28 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.83 6.43 -51.93 -0.33 0.50 16 30 H 0.09 1.67 5.96 -51.93 -0.31 1.36 16 31 H 0.08 1.30 7.96 -51.93 -0.41 0.88 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -32.14 297.89 -6.30 -38.43 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.21 Total: -0.24 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 0.14 Total: -12.70 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.76 Total: -25.17 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.45 Total: -21.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.14 -6.30 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751832657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.974 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds