Wall clock time and date at job start Sun Mar 29 2020 22:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47229 * 2 1 4 4 C 1.53003 * 109.47228 * 119.99755 * 2 1 3 5 5 H 1.09001 * 109.46902 * 300.00336 * 4 2 1 6 6 C 1.53003 * 109.46813 * 59.99595 * 4 2 1 7 7 C 1.53003 * 109.46813 * 180.02562 * 6 4 2 8 8 C 1.53008 * 109.47123 * 300.00205 * 7 6 4 9 9 H 1.08998 * 109.46978 * 300.00309 * 8 7 6 10 10 C 1.50702 * 109.46908 * 180.02562 * 8 7 6 11 11 O 1.21207 * 119.99714 * 239.72505 * 10 8 7 12 12 O 1.34314 * 119.99951 * 60.00204 * 10 8 7 13 13 C 1.34921 * 116.99938 * 179.72575 * 12 10 8 14 14 H 1.07996 * 119.99717 * 359.97438 * 13 12 10 15 15 C 1.38744 * 120.00031 * 179.97438 * 13 12 10 16 16 N 1.31446 * 120.00294 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00387 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46844 * 89.99977 * 17 15 13 19 19 H 1.48493 * 109.47837 * 210.00217 * 17 15 13 20 20 H 1.48503 * 109.46898 * 330.00262 * 17 15 13 21 21 C 1.53001 * 109.46935 * 60.00037 * 8 7 6 22 22 C 1.52994 * 109.47367 * 299.99927 * 21 8 7 23 23 H 1.08996 * 109.47498 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46881 * 300.00510 * 1 2 3 25 25 H 1.08994 * 109.47083 * 60.00074 * 1 2 3 26 26 H 1.08993 * 109.47149 * 239.99757 * 2 1 3 27 27 H 1.09001 * 109.47075 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46771 * 299.99957 * 3 2 1 29 29 H 1.08993 * 109.47254 * 59.99821 * 3 2 1 30 30 H 1.08993 * 109.47555 * 300.00224 * 6 4 2 31 31 H 1.09001 * 109.46782 * 60.00667 * 6 4 2 32 32 H 1.08996 * 109.47071 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47446 * 60.00229 * 7 6 4 34 34 H 0.96993 * 120.00267 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.47065 * 60.00325 * 21 8 7 36 36 H 1.09001 * 109.46892 * 180.02562 * 21 8 7 37 37 H 1.08996 * 109.47254 * 179.97438 * 22 21 8 38 38 H 1.09001 * 109.47036 * 300.00645 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5299 -2.1637 1.2493 7 6 2.0394 -2.8847 2.4989 8 6 3.5695 -2.8847 2.4995 9 1 3.9332 -3.3987 1.6098 10 6 4.0713 -3.5955 3.7301 11 8 4.7719 -3.0081 4.5258 12 8 3.7467 -4.8814 3.9421 13 6 4.2333 -5.4597 5.0598 14 1 4.8539 -4.8905 5.7359 15 6 3.9364 -6.7856 5.3405 16 7 3.1806 -7.4783 4.5179 17 14 4.6106 -7.5865 6.8876 18 1 3.6499 -7.3941 8.0035 19 1 4.8067 -9.0388 6.6481 20 1 5.9113 -6.9631 7.2411 21 6 4.0795 -1.4422 2.4995 22 6 3.5700 -0.7212 1.2499 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.4400 -2.1637 1.2493 31 1 1.8933 -2.6776 0.3594 32 1 1.6764 -3.9124 2.4988 33 1 1.6758 -2.3707 3.3887 34 1 2.9727 -8.4051 4.7143 35 1 3.7159 -0.9283 3.3892 36 1 5.1695 -1.4423 2.4994 37 1 3.9330 0.3066 1.2501 38 1 3.9337 -1.2353 0.3602 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753452148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:50 Heat of formation + Delta-G solvation = -124.195034 kcal Electronic energy + Delta-G solvation = -17678.558555 eV Core-core repulsion = 14905.659045 eV Total energy + Delta-G solvation = -2772.899510 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61460 -38.30491 -35.42648 -34.41523 -32.08312 -30.67279 -29.61964 -27.18480 -25.48659 -23.54005 -22.12598 -20.75352 -19.67578 -19.15214 -17.63821 -16.51458 -15.59579 -14.89301 -14.37462 -14.32946 -14.18514 -13.99430 -13.53199 -13.18707 -13.08495 -12.52567 -12.28691 -12.18665 -11.74875 -11.51124 -11.32225 -11.21722 -11.08257 -11.03779 -10.82721 -10.59599 -10.40374 -10.30425 -10.21930 -9.93325 -9.78591 -9.56489 -8.82247 -8.52031 -6.35524 -4.02996 3.14899 3.21732 3.27942 3.61786 3.99883 4.55098 4.74290 4.78560 4.88788 5.05692 5.16323 5.28053 5.45565 5.50333 5.53820 5.58285 5.63152 5.74878 5.77330 5.78446 5.83723 5.87440 6.00030 6.07181 6.10278 6.17857 6.29996 6.34928 6.45268 6.48268 6.53939 6.68899 6.77073 6.98036 7.45659 8.02162 8.79925 9.13812 9.95003 10.82771 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.051483 B = 0.004926 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.741149 B = 5683.075709 C = 6060.273676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.084 4.084 5 H 0.069 0.931 6 C -0.112 4.112 7 C -0.109 4.109 8 C -0.068 4.068 9 H 0.091 0.909 10 C 0.401 3.599 11 O -0.559 6.559 12 O -0.215 6.215 13 C -0.382 4.382 14 H 0.093 0.907 15 C 0.042 3.958 16 N -0.867 5.867 17 Si 0.941 3.059 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.267 1.267 21 C -0.099 4.099 22 C -0.113 4.113 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.268 0.732 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 12.373 -9.253 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.103 4.103 5 H 0.088 0.912 6 C -0.150 4.150 7 C -0.147 4.147 8 C -0.087 4.087 9 H 0.109 0.891 10 C 0.247 3.753 11 O -0.456 6.456 12 O -0.122 6.122 13 C -0.458 4.458 14 H 0.111 0.889 15 C -0.162 4.162 16 N -0.504 5.504 17 Si 0.766 3.234 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.136 4.136 22 C -0.151 4.151 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.317 12.282 -9.062 15.862 hybrid contribution 0.340 -0.492 0.783 0.985 sum -3.977 11.790 -8.280 14.946 Atomic orbital electron populations 1.21902 0.95538 1.01950 1.01286 1.21146 0.95532 0.95965 0.98413 1.21900 1.01277 0.96151 1.01301 1.21258 0.95477 0.95943 0.97598 0.91223 1.21651 1.00275 0.94819 0.98229 1.21493 0.93274 1.01924 0.98004 1.20775 0.96881 0.95544 0.95523 0.89078 1.23289 0.81283 0.82688 0.88009 1.90532 1.39344 1.67746 1.47973 1.83885 1.63586 1.22698 1.42015 1.21206 1.31281 0.94696 0.98641 0.88892 1.25300 0.96475 0.95348 0.99078 1.69992 1.34899 1.09556 1.36000 0.85711 0.79374 0.78160 0.80177 1.19947 1.20371 1.19166 1.21347 1.00804 0.93544 0.97934 1.21659 0.95024 1.00212 0.98174 0.92212 0.92836 0.93198 0.91359 0.92342 0.93200 0.92831 0.91645 0.91904 0.90277 0.91907 0.92203 0.91449 0.91506 0.91725 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 2 C -0.09 -0.90 2.51 -90.62 -0.23 -1.12 16 3 C -0.15 -1.32 8.84 37.16 0.33 -0.99 16 4 C -0.08 -0.98 1.77 -90.62 -0.16 -1.14 16 5 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.11 -1.44 4.85 -26.73 -0.13 -1.57 16 7 C -0.11 -1.84 5.14 -26.73 -0.14 -1.97 16 8 C -0.07 -1.28 2.63 -91.77 -0.24 -1.52 16 9 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 10 C 0.40 10.17 7.20 36.01 0.26 10.43 16 11 O -0.56 -15.45 15.22 -19.05 -0.29 -15.74 16 12 O -0.21 -6.28 9.65 -20.72 -0.20 -6.48 16 13 C -0.38 -11.58 9.64 30.92 0.30 -11.28 16 14 H 0.09 2.85 6.86 -52.49 -0.36 2.49 16 15 C 0.04 1.19 5.49 -17.53 -0.10 1.10 16 16 N -0.87 -25.79 13.67 55.48 0.76 -25.03 16 17 Si 0.94 21.73 29.55 -169.99 -5.02 16.71 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.10 -1.60 4.49 -26.73 -0.12 -1.72 16 22 C -0.11 -1.40 4.85 -26.73 -0.13 -1.53 16 23 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 24 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 302.29 15.07 4.56 4.56 Total: -1.00 -32.58 302.29 -6.55 -39.12 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.32 Total: -0.79 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.03 Total: -12.34 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.76 Total: -25.03 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.49 Total: -22.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.58 -6.55 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753452148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.071 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds