Wall clock time and date at job start Sun Mar 29 2020 22:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47300 * 2 1 4 4 C 1.53004 * 109.46993 * 120.00235 * 2 1 3 5 5 C 1.53008 * 109.46935 * 170.11327 * 4 2 1 6 6 C 1.50697 * 110.01343 * 187.76742 * 5 4 2 7 7 O 1.21202 * 120.00312 * 359.58794 * 6 5 4 8 8 O 1.34317 * 119.99608 * 179.30984 * 6 5 4 9 9 C 1.34922 * 116.99811 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00191 * 0.02562 * 9 8 6 11 11 C 1.38749 * 119.99896 * 180.02562 * 9 8 6 12 12 N 1.31447 * 120.00040 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00087 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46693 * 90.00257 * 13 11 9 15 15 H 1.48498 * 109.47172 * 210.00063 * 13 11 9 16 16 H 1.48498 * 109.47415 * 330.00483 * 13 11 9 17 17 C 1.54264 * 110.07273 * 309.18973 * 5 4 2 18 18 C 1.54888 * 104.19870 * 95.69816 * 17 5 4 19 19 C 1.54889 * 102.74814 * 37.94129 * 18 17 5 20 20 C 1.53880 * 110.02933 * 66.38015 * 5 4 2 21 21 H 1.08999 * 109.47166 * 300.00271 * 1 2 3 22 22 H 1.09003 * 109.47062 * 59.99824 * 1 2 3 23 23 H 1.09005 * 109.47162 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47087 * 240.00204 * 2 1 3 25 25 H 1.09007 * 109.46941 * 75.99959 * 3 2 1 26 26 H 1.08998 * 109.47116 * 195.99879 * 3 2 1 27 27 H 1.08998 * 109.47261 * 315.99934 * 3 2 1 28 28 H 1.08993 * 109.47058 * 50.11862 * 4 2 1 29 29 H 1.08994 * 109.46847 * 290.10729 * 4 2 1 30 30 H 0.96993 * 120.00491 * 179.97438 * 12 11 9 31 31 H 1.09002 * 110.48232 * 214.37244 * 17 5 4 32 32 H 1.08998 * 110.48549 * 337.01751 * 17 5 4 33 33 H 1.09000 * 110.75518 * 279.62805 * 18 17 5 34 34 H 1.08999 * 110.75456 * 156.25563 * 18 17 5 35 35 H 1.09005 * 110.48613 * 203.38388 * 19 18 17 36 36 H 1.08997 * 110.48699 * 80.73689 * 19 18 17 37 37 H 1.08996 * 110.03139 * 359.94743 * 20 5 4 38 38 H 1.09002 * 110.03183 * 121.38448 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5498 -0.9394 1.1316 6 6 4.0343 -1.8125 2.2602 7 8 3.2510 -2.2198 3.0906 8 8 5.3333 -2.1439 2.3428 9 6 5.7007 -2.9285 3.3771 10 1 4.9623 -3.2609 4.0917 11 6 7.0273 -3.3082 3.5228 12 7 7.3853 -4.0721 4.5308 13 14 8.3044 -2.7338 2.2866 14 1 8.8834 -1.4425 2.7369 15 1 9.3824 -3.7495 2.1804 16 1 7.6626 -2.5525 0.9598 17 6 3.8862 -1.5934 -0.2245 18 6 4.2612 -0.4008 -1.1388 19 6 5.0372 0.5349 -0.1790 20 6 4.2816 0.4139 1.1605 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.9267 1.8679 0.9972 26 1 3.0924 1.4557 -0.2832 27 1 1.4642 2.0315 -0.7139 28 1 1.5398 -1.6853 1.3418 29 1 1.8279 -0.1158 2.1304 30 1 8.3126 -4.3379 4.6325 31 1 4.7308 -2.2745 -0.1204 32 1 3.0173 -2.1192 -0.6204 33 1 3.3658 0.0916 -1.5182 34 1 4.8999 -0.7287 -1.9589 35 1 5.0084 1.5625 -0.5417 36 1 6.0677 0.1975 -0.0676 37 1 3.5610 1.2260 1.2575 38 1 4.9873 0.4391 1.9909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756568775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:07 Heat of formation + Delta-G solvation = -91.061634 kcal Electronic energy + Delta-G solvation = -18596.849517 eV Core-core repulsion = 15825.386779 eV Total energy + Delta-G solvation = -2771.462738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41369 -38.27980 -35.25412 -34.51805 -32.23245 -30.45001 -28.98204 -26.92485 -25.97863 -24.56133 -21.66453 -20.48459 -20.04747 -18.45529 -17.91245 -16.53501 -16.35055 -15.16329 -14.55479 -14.36006 -14.01914 -13.84446 -13.43647 -13.16258 -12.71640 -12.37892 -12.34947 -12.11612 -11.91728 -11.43906 -11.24392 -10.99860 -10.92624 -10.82563 -10.77622 -10.53738 -10.44665 -10.28715 -10.24816 -10.07138 -9.90454 -9.62927 -8.90341 -8.62941 -6.32209 -4.07086 3.17426 3.25718 3.38175 3.46184 4.12620 4.28452 4.80457 4.81280 4.99831 5.03273 5.06674 5.18657 5.23913 5.49765 5.59858 5.65625 5.69646 5.74086 5.79253 5.85153 5.87192 5.98289 6.03322 6.08873 6.14652 6.16868 6.18290 6.34927 6.39439 6.50160 6.57780 6.59965 6.64643 6.71194 7.81535 8.09426 8.69817 9.07334 9.78273 10.76824 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.033857 B = 0.007866 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.802347 B = 3558.939069 C = 4067.654178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.169 4.169 4 C -0.088 4.088 5 C -0.042 4.042 6 C 0.420 3.580 7 O -0.541 6.541 8 O -0.249 6.249 9 C -0.380 4.380 10 H 0.107 0.893 11 C 0.065 3.935 12 N -0.878 5.878 13 Si 0.902 3.098 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.259 1.259 17 C -0.114 4.114 18 C -0.131 4.131 19 C -0.123 4.123 20 C -0.132 4.132 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.278 0.722 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 10.480 -12.891 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.226 4.226 4 C -0.125 4.125 5 C -0.043 4.043 6 C 0.265 3.735 7 O -0.436 6.436 8 O -0.158 6.158 9 C -0.456 4.456 10 H 0.125 0.875 11 C -0.138 4.138 12 N -0.518 5.518 13 Si 0.727 3.273 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.183 1.183 17 C -0.152 4.152 18 C -0.168 4.168 19 C -0.160 4.160 20 C -0.169 4.169 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.346 10.255 -12.555 17.798 hybrid contribution 0.694 -0.007 -0.149 0.710 sum -6.652 10.247 -12.705 17.626 Atomic orbital electron populations 1.21851 0.95595 1.01590 1.01308 1.21307 0.95186 0.96462 0.99035 1.22511 1.02798 0.95916 1.01353 1.21508 0.92372 1.01277 0.97365 1.20917 0.96013 0.94511 0.92875 1.22935 0.81709 0.82060 0.86747 1.90575 1.55992 1.54576 1.42470 1.83521 1.25621 1.59373 1.47264 1.20651 0.95600 1.26366 1.02982 0.87530 1.24522 0.96811 0.95546 0.96901 1.69610 1.18782 1.34249 1.29150 0.86261 0.80250 0.78546 0.82208 1.19934 1.20878 1.18265 1.22494 1.01965 0.97899 0.92801 1.22794 1.00132 0.96340 0.97549 1.22354 0.99811 0.98990 0.94846 1.22748 0.99656 0.96052 0.98490 0.92847 0.93045 0.92792 0.90138 0.92581 0.89978 0.93514 0.91113 0.91442 0.91169 0.90267 0.91168 0.90431 0.91729 0.91676 0.91179 0.89163 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.11 37.15 0.34 -1.18 16 2 C -0.10 -1.18 2.31 -90.62 -0.21 -1.39 16 3 C -0.17 -1.76 7.00 37.16 0.26 -1.51 16 4 C -0.09 -1.35 3.22 -26.73 -0.09 -1.44 16 5 C -0.04 -0.74 0.77 -154.54 -0.12 -0.85 16 6 C 0.42 10.15 6.29 36.00 0.23 10.38 16 7 O -0.54 -14.81 15.16 -19.04 -0.29 -15.10 16 8 O -0.25 -6.69 7.98 -20.72 -0.17 -6.85 16 9 C -0.38 -11.54 10.10 30.92 0.31 -11.23 16 10 H 0.11 3.58 7.09 -52.48 -0.37 3.21 16 11 C 0.07 1.91 5.49 -17.53 -0.10 1.81 16 12 N -0.88 -26.52 13.96 55.48 0.77 -25.75 16 13 Si 0.90 21.76 28.62 -169.99 -4.86 16.89 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 17 C -0.11 -1.77 5.29 -25.07 -0.13 -1.91 16 18 C -0.13 -1.61 6.06 -24.74 -0.15 -1.76 16 19 C -0.12 -1.61 5.92 -25.07 -0.15 -1.76 16 20 C -0.13 -2.04 5.28 -25.61 -0.14 -2.18 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.90 4.63 -51.93 -0.24 0.66 16 25 H 0.06 0.60 7.14 -51.93 -0.37 0.23 16 26 H 0.08 0.85 2.83 -51.93 -0.15 0.71 16 27 H 0.05 0.42 8.04 -51.93 -0.42 0.00 16 28 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 29 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 30 H 0.28 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.08 1.42 7.52 -51.93 -0.39 1.03 16 32 H 0.07 0.98 7.07 -51.93 -0.37 0.61 16 33 H 0.08 0.81 4.65 -51.93 -0.24 0.57 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.19 4.15 -51.93 -0.22 0.97 16 38 H 0.07 1.24 7.59 -51.93 -0.39 0.84 16 LS Contribution 286.97 15.07 4.32 4.32 Total: -1.00 -32.48 286.97 -5.78 -38.26 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.62 Total: 1.24 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 0.06 Total: -13.01 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.45 Total: -21.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.86 Total: 16.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.48 -5.78 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756568775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.800 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds