Wall clock time and date at job start Sun Mar 29 2020 22:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.01939 * 2 1 4 4 C 1.54262 * 110.03039 * 238.60449 * 2 1 3 5 5 C 1.54882 * 104.19749 * 217.10729 * 4 2 1 6 6 C 1.54891 * 102.74981 * 37.94674 * 5 4 2 7 7 H 1.08994 * 110.48641 * 80.86578 * 6 5 4 8 8 C 1.50701 * 110.48807 * 203.38218 * 6 5 4 9 9 O 1.20822 * 119.99988 * 116.75579 * 8 6 5 10 10 O 1.34231 * 119.99870 * 296.75232 * 8 6 5 11 11 C 1.45198 * 116.99983 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46884 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 C 1.54084 * 109.92524 * 121.47655 * 2 1 3 23 23 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47020 * 299.94185 * 1 2 3 25 25 H 1.09003 * 109.47071 * 59.93455 * 1 2 3 26 26 H 1.09001 * 110.48310 * 98.43381 * 4 2 1 27 27 H 1.08993 * 110.60163 * 335.84712 * 4 2 1 28 28 H 1.09005 * 110.75755 * 279.63262 * 5 4 2 29 29 H 1.08994 * 110.75909 * 156.26068 * 5 4 2 30 30 H 1.09001 * 109.46782 * 60.00304 * 11 10 8 31 31 H 1.08992 * 109.47385 * 300.00392 * 11 10 8 32 32 H 1.09002 * 109.47398 * 300.00338 * 12 11 10 33 33 H 1.09001 * 109.47194 * 60.00518 * 12 11 10 34 34 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 35 35 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 37 37 H 1.09002 * 110.15987 * 0.12037 * 22 2 1 38 38 H 1.08997 * 110.00749 * 238.62228 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7550 -1.2371 5 6 3.3135 -1.5005 -0.7197 6 6 2.8873 -1.9411 0.7027 7 1 2.2790 -2.8442 0.6561 8 6 4.0988 -2.1669 1.5701 9 8 4.2786 -1.4798 2.5475 10 8 4.9782 -3.1315 1.2569 11 6 6.1213 -3.2927 2.1375 12 6 7.0050 -4.4307 1.6228 13 6 8.2093 -4.6010 2.5511 14 6 9.0801 -5.7214 2.0439 15 1 8.8026 -6.2581 1.1487 16 6 10.2316 -6.0607 2.7220 17 7 10.5697 -5.4068 3.8119 18 14 11.3107 -7.4500 2.0937 19 1 10.7136 -8.0211 0.8598 20 1 12.6663 -6.9254 1.7901 21 1 11.4101 -8.5076 3.1313 22 6 2.0551 -0.7564 1.2354 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5129 0.8905 25 1 -0.3633 0.5149 -0.8894 26 1 2.3297 -0.0528 -2.0254 27 1 1.3152 -1.4651 -1.5994 28 1 4.1709 -0.8289 -0.6754 29 1 3.5324 -2.3673 -1.3432 30 1 5.7744 -3.5281 3.1437 31 1 6.6968 -2.3673 2.1589 32 1 6.4297 -5.3562 1.6011 33 1 7.3519 -4.1948 0.6168 34 1 8.7847 -3.6755 2.5732 35 1 7.8622 -4.8370 3.5570 36 1 11.3801 -5.6453 4.2888 37 1 1.2212 -1.1247 1.8329 38 1 2.6836 -0.0988 1.8360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776413951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:53 Heat of formation + Delta-G solvation = -129.921344 kcal Electronic energy + Delta-G solvation = -16802.801385 eV Core-core repulsion = 14029.653564 eV Total energy + Delta-G solvation = -2773.147822 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.48884 -38.28129 -36.29786 -33.98115 -31.99470 -31.46581 -29.19241 -27.20471 -25.64064 -23.46217 -22.11946 -20.52382 -20.30488 -19.39218 -17.68118 -16.68662 -16.30533 -16.01914 -15.25025 -14.75305 -14.46593 -13.98707 -13.68163 -13.47822 -13.14058 -12.44835 -12.28649 -12.12380 -11.91688 -11.76843 -11.37450 -11.05643 -11.03122 -10.98693 -10.96154 -10.68384 -10.62558 -10.58680 -10.36100 -10.20066 -9.71082 -9.48664 -9.14411 -8.39017 -6.03536 -4.06501 2.38382 2.93583 3.30078 3.37455 3.41900 4.22464 4.30641 4.43522 4.52984 4.93922 5.01884 5.09804 5.21697 5.24423 5.31316 5.32497 5.35367 5.53562 5.59601 5.65413 5.70153 5.71128 5.79910 5.86928 5.96214 6.03613 6.10535 6.17029 6.54542 6.55201 6.87711 7.00048 7.60855 7.71760 7.94849 7.98984 8.36338 9.00088 9.57841 11.07997 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.066299 B = 0.003451 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.226447 B = 8112.718689 C = 8392.399027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.088 4.088 7 H 0.110 0.890 8 C 0.462 3.538 9 O -0.513 6.513 10 O -0.356 6.356 11 C 0.067 3.933 12 C -0.108 4.108 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.112 4.112 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.869 9.301 -9.004 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.107 4.107 7 H 0.128 0.872 8 C 0.305 3.695 9 O -0.402 6.402 10 O -0.273 6.273 11 C -0.006 4.006 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.150 4.150 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.640 9.492 -8.559 22.601 hybrid contribution 0.792 -0.727 0.005 1.075 sum -17.849 8.765 -8.554 21.646 Atomic orbital electron populations 1.21894 0.94876 1.01860 1.01599 1.21802 0.95771 0.99632 0.94431 0.90746 1.22461 0.96951 0.99058 0.97249 1.22468 0.98346 1.00844 0.93301 1.21893 0.92411 1.01244 0.95175 0.87229 1.23541 0.84204 0.77531 0.84238 1.90633 1.75408 1.46290 1.27874 1.86504 1.34609 1.51651 1.54508 1.23491 0.83631 1.00934 0.92537 1.21755 0.96658 0.95003 1.01190 1.19058 0.90665 0.97436 0.94225 1.21215 1.06958 1.16973 1.10730 0.92373 1.25040 0.97775 0.96767 0.94953 1.69982 1.24959 1.40966 1.17480 0.86486 0.80348 0.82020 0.78871 1.19658 1.20972 1.20968 1.22296 0.99205 0.95850 0.97630 0.92500 0.92667 0.92717 0.91231 0.91052 0.90857 0.90004 0.91605 0.91615 0.92179 0.92166 0.96251 0.96245 0.92950 0.90930 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.84 37.16 0.33 -0.63 16 2 C -0.10 -0.78 3.51 -89.39 -0.31 -1.09 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.90 6.36 -25.08 -0.16 -1.06 16 5 C -0.11 -1.07 6.32 -24.74 -0.16 -1.22 16 6 C -0.09 -0.97 3.36 -90.11 -0.30 -1.27 16 7 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 8 C 0.46 7.18 7.25 36.01 0.26 7.44 16 9 O -0.51 -9.39 15.19 -18.75 -0.28 -9.67 16 10 O -0.36 -6.10 10.22 -39.26 -0.40 -6.50 16 11 C 0.07 1.27 5.47 37.16 0.20 1.48 16 12 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 13 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 14 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.11 -1.12 5.83 -25.50 -0.15 -1.27 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.47 7.86 -51.93 -0.41 0.07 16 28 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 31 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 38 H 0.08 1.01 6.88 -51.93 -0.36 0.65 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -31.22 313.88 -7.84 -39.06 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -6.62 Total: -4.79 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.99 Total: -13.18 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.69 Total: -16.18 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.22 -7.84 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776413951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.862 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds