Wall clock time and date at job start Sun Mar 29 2020 22:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.05616 * 2 1 4 4 C 1.53866 * 110.03095 * 121.42205 * 2 1 3 5 5 C 1.54470 * 106.68890 * 119.44217 * 4 2 1 6 6 C 1.54893 * 104.09835 * 23.34082 * 5 4 2 7 7 H 1.08993 * 110.75721 * 80.70826 * 6 5 4 8 8 C 1.50693 * 110.75479 * 203.89715 * 6 5 4 9 9 O 1.20826 * 120.00092 * 116.06434 * 8 6 5 10 10 O 1.34232 * 120.00196 * 296.06320 * 8 6 5 11 11 C 1.45196 * 117.00388 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47152 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 C 1.54271 * 110.02948 * 238.58577 * 2 1 3 23 23 H 1.08999 * 109.47592 * 181.40860 * 1 2 3 24 24 H 1.08992 * 109.47389 * 301.41806 * 1 2 3 25 25 H 1.09002 * 109.46905 * 61.41653 * 1 2 3 26 26 H 1.09008 * 110.03388 * 238.56888 * 4 2 1 27 27 H 1.08997 * 110.03584 * 359.94774 * 4 2 1 28 28 H 1.09004 * 110.40120 * 264.75933 * 5 4 2 29 29 H 1.09000 * 110.66188 * 142.05160 * 5 4 2 30 30 H 1.09001 * 109.47152 * 60.00115 * 11 10 8 31 31 H 1.09004 * 109.47123 * 299.99985 * 11 10 8 32 32 H 1.09001 * 109.46832 * 60.00123 * 12 11 10 33 33 H 1.09001 * 109.47502 * 299.99645 * 12 11 10 34 34 H 1.08998 * 109.46509 * 60.00429 * 13 12 11 35 35 H 1.08993 * 109.46955 * 299.99989 * 13 12 11 36 36 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 37 37 H 1.08997 * 110.48419 * 98.42727 * 22 2 1 38 38 H 1.08994 * 110.48928 * 335.78450 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0570 -0.7536 1.2336 5 6 2.8923 -1.9406 0.7049 6 6 3.3137 -1.5008 -0.7193 7 1 4.1717 -0.8299 -0.6783 8 6 3.6161 -2.6996 -1.5808 9 8 2.9378 -2.9311 -2.5535 10 8 4.6392 -3.5102 -1.2677 11 6 4.8726 -4.6452 -2.1425 12 6 6.0708 -5.4466 -1.6296 13 6 6.3163 -6.6431 -2.5512 14 6 7.4969 -7.4320 -2.0463 15 1 8.0195 -7.1123 -1.1569 16 6 7.9091 -8.5626 -2.7193 17 7 7.2724 -8.9522 -3.8020 18 14 9.3720 -9.5409 -2.0931 19 1 9.6104 -10.7021 -2.9876 20 1 9.0918 -10.0246 -0.7173 21 1 10.5773 -8.6735 -2.0769 22 6 2.0584 -0.7555 -1.2369 23 1 -0.3634 -1.0273 0.0253 24 1 -0.3634 0.5356 0.8769 25 1 -0.3633 0.4917 -0.9024 26 1 2.6867 -0.0955 1.8325 27 1 1.2229 -1.1186 1.8328 28 1 2.2836 -2.8438 0.6608 29 1 3.7706 -2.1015 1.3300 30 1 5.0792 -4.2895 -3.1520 31 1 3.9879 -5.2819 -2.1555 32 1 5.8647 -5.8022 -0.6201 33 1 6.9553 -4.8098 -1.6170 34 1 6.5222 -6.2877 -3.5608 35 1 5.4318 -7.2798 -2.5633 36 1 6.5125 -8.4444 -4.1270 37 1 2.3296 -0.0536 -2.0255 38 1 1.3142 -1.4659 -1.5967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776413960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:58 Heat of formation + Delta-G solvation = -134.072395 kcal Electronic energy + Delta-G solvation = -16840.054323 eV Core-core repulsion = 14066.726498 eV Total energy + Delta-G solvation = -2773.327825 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53004 -38.34365 -36.37487 -34.29061 -32.04570 -31.45314 -29.20279 -26.95446 -25.59580 -23.36733 -22.27065 -20.67297 -20.04714 -19.87736 -17.53006 -16.84652 -16.47113 -16.14546 -15.94422 -14.33886 -14.13504 -13.85555 -13.73319 -13.43216 -13.22825 -12.86864 -12.50940 -12.25038 -11.97452 -11.57580 -11.45274 -11.20664 -11.07671 -10.94537 -10.88743 -10.85467 -10.68365 -10.45093 -10.30629 -10.13244 -9.84113 -9.83613 -8.61031 -8.35364 -6.38830 -4.08591 2.31903 2.86176 3.43627 3.45661 3.64511 4.17049 4.26465 4.48133 4.54249 4.89531 4.99446 5.05443 5.11844 5.21128 5.28347 5.33169 5.38186 5.48589 5.51349 5.54249 5.58680 5.72491 5.76859 5.84380 5.91017 5.97376 6.00503 6.14873 6.41448 6.42040 6.73851 6.85955 7.32278 7.43926 7.91700 8.16622 8.43036 8.84931 9.63868 11.01923 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.063341 B = 0.003481 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.948952 B = 8041.119691 C = 8308.857207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.090 4.090 7 H 0.112 0.888 8 C 0.463 3.537 9 O -0.513 6.513 10 O -0.356 6.356 11 C 0.067 3.933 12 C -0.102 4.102 13 C 0.011 3.989 14 C -0.603 4.603 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 1.071 2.929 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 C -0.105 4.105 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.269 0.731 37 H 0.072 0.928 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 18.300 9.343 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.149 4.149 6 C -0.109 4.109 7 H 0.130 0.870 8 C 0.306 3.694 9 O -0.402 6.402 10 O -0.272 6.272 11 C -0.006 4.006 12 C -0.139 4.139 13 C -0.026 4.026 14 C -0.641 4.641 15 H 0.069 0.931 16 C -0.189 4.189 17 N -0.548 5.548 18 Si 0.899 3.101 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.142 4.142 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.134 16.852 8.734 21.517 hybrid contribution -0.960 1.296 0.105 1.616 sum -11.094 18.148 8.839 23.034 Atomic orbital electron populations 1.21881 0.94729 1.02014 1.01612 1.21757 0.96027 0.99417 0.94420 0.90742 1.22278 0.99509 0.96668 0.97340 1.22358 1.00468 0.98684 0.93403 1.22046 1.00645 0.92967 0.95230 0.87022 1.23538 0.77879 0.83877 0.84108 1.90644 1.48944 1.72577 1.27986 1.86506 1.48094 1.37916 1.54725 1.23475 1.00271 0.84198 0.92691 1.21609 0.94284 0.97044 1.00999 1.19178 0.97293 0.91766 0.94392 1.21994 1.15517 1.12635 1.13977 0.93067 1.25899 1.02084 0.96273 0.94694 1.70784 1.20815 1.41213 1.21970 0.83517 0.74910 0.76118 0.75568 1.20729 1.21375 1.21384 1.22413 0.95652 0.98895 0.97274 0.92449 0.92651 0.92612 0.91395 0.91177 0.91061 0.90080 0.91664 0.91669 0.91986 0.91983 0.97164 0.97160 0.92086 0.90939 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.84 37.16 0.33 -0.69 16 2 C -0.10 -0.74 3.50 -89.50 -0.31 -1.06 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.90 6.46 -25.51 -0.16 -1.06 16 5 C -0.11 -1.06 6.28 -24.96 -0.16 -1.22 16 6 C -0.09 -0.98 3.39 -89.78 -0.30 -1.29 16 7 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.46 7.18 7.26 36.00 0.26 7.44 16 9 O -0.51 -9.35 15.50 -18.75 -0.29 -9.64 16 10 O -0.36 -6.10 10.22 -39.26 -0.40 -6.50 16 11 C 0.07 1.27 5.47 37.16 0.20 1.47 16 12 C -0.10 -2.17 5.53 -26.73 -0.15 -2.32 16 13 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 14 C -0.60 -17.42 9.11 -34.44 -0.31 -17.73 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 16 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 17 N -0.91 -28.31 13.65 55.43 0.76 -27.55 16 18 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.10 -1.03 5.42 -25.07 -0.14 -1.17 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 28 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 35 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 36 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.94 7.19 -51.93 -0.37 0.57 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -32.08 313.17 -7.85 -39.93 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -6.59 Total: -4.17 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -0.96 Total: -17.14 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.76 Total: -27.55 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.69 Total: -16.14 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.08 -7.85 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776413960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.141 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds