Wall clock time and date at job start Sun Mar 29 2020 22:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48501 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47009 * 299.99450 * 3 2 1 6 6 H 1.48501 * 109.47571 * 59.99644 * 3 2 1 7 7 C 1.37876 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99802 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46832 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.46638 * 182.85439 * 11 10 9 13 13 C 1.46260 * 111.00409 * 65.56801 * 12 11 10 14 14 C 1.47540 * 114.37901 * 148.54919 * 13 12 11 15 15 C 1.54946 * 109.73099 * 62.21724 * 14 13 12 16 16 N 1.44673 * 109.52967 * 290.52645 * 15 14 13 17 17 C 1.34773 * 118.54476 * 269.09987 * 16 15 14 18 18 O 1.21288 * 119.99835 * 179.97438 * 17 16 15 19 19 C 1.47779 * 122.90642 * 89.07659 * 16 15 14 20 20 C 1.44763 * 111.00159 * 302.07590 * 12 11 10 21 21 H 0.97005 * 120.00111 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47333 * 59.99698 * 9 7 2 23 23 H 1.09000 * 109.46976 * 299.99838 * 9 7 2 24 24 H 1.08999 * 109.47142 * 59.99633 * 10 9 7 25 25 H 1.09003 * 109.46575 * 299.99597 * 10 9 7 26 26 H 1.08994 * 109.47126 * 302.85255 * 11 10 9 27 27 H 1.08999 * 109.47053 * 62.85362 * 11 10 9 28 28 H 1.09001 * 108.50443 * 269.82081 * 13 12 11 29 29 H 1.09000 * 108.50087 * 27.44005 * 13 12 11 30 30 H 1.08998 * 109.42854 * 182.30099 * 14 13 12 31 31 H 1.09004 * 109.42446 * 302.19754 * 14 13 12 32 32 H 1.09006 * 109.46329 * 50.54618 * 15 14 13 33 33 H 1.09000 * 109.46312 * 170.51694 * 15 14 13 34 34 H 1.08002 * 120.00079 * 0.02562 * 17 16 15 35 35 H 1.08992 * 109.06639 * 78.65081 * 19 16 15 36 36 H 1.09003 * 109.06362 * 197.58289 * 19 16 15 37 37 H 1.09006 * 109.43450 * 337.92445 * 20 12 11 38 38 H 1.08995 * 109.43715 * 97.79448 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4335 -6.1027 0.0702 13 6 3.1496 -6.1024 1.3455 14 6 3.5317 -7.4427 1.8297 15 6 4.5038 -8.1056 0.8216 16 7 3.7910 -8.4324 -0.3942 17 6 3.2223 -9.6497 -0.4999 18 8 2.6180 -9.9513 -1.5073 19 6 3.6584 -7.4903 -1.5250 20 6 3.3644 -6.0590 -1.0376 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8721 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8895 26 1 0.8162 -5.0227 0.8647 27 1 0.8923 -5.0675 -0.9131 28 1 4.0538 -5.5039 1.2344 29 1 2.5158 -5.6329 2.0979 30 1 4.0212 -7.3519 2.7994 31 1 2.6388 -8.0598 1.9306 32 1 5.3156 -7.4153 0.5923 33 1 4.9140 -9.0164 1.2579 34 1 3.3040 -10.3563 0.3128 35 1 4.5861 -7.4881 -2.0972 36 1 2.8445 -7.8210 -2.1703 37 1 2.9308 -5.4801 -1.8531 38 1 4.2925 -5.5885 -0.7132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781560622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:32 Heat of formation + Delta-G solvation = -37.093748 kcal Electronic energy + Delta-G solvation = -17600.063787 eV Core-core repulsion = 14863.234023 eV Total energy + Delta-G solvation = -2736.829764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.06708 -38.25164 -35.65235 -33.52680 -32.84462 -31.32969 -28.64015 -26.40440 -25.59350 -23.50982 -22.80735 -21.10919 -20.06042 -19.23420 -17.21933 -16.73447 -16.32400 -15.53007 -15.25571 -14.63260 -14.53340 -14.29671 -13.92051 -13.44099 -13.22817 -12.78139 -12.53413 -12.26281 -11.99016 -11.62402 -11.46553 -11.12402 -10.99097 -10.82829 -10.72792 -10.65333 -10.52337 -9.85569 -9.70834 -9.53827 -9.19024 -8.63690 -8.38444 -7.93689 -6.02867 -4.05795 2.70494 3.09091 3.27917 3.35546 3.39110 4.09737 4.42965 4.65453 4.75628 4.83103 5.06942 5.16820 5.21159 5.32632 5.40276 5.50705 5.59673 5.70131 5.74206 5.78372 5.96089 6.00604 6.02250 6.20682 6.23831 6.50037 6.53035 6.74689 6.99574 7.34018 7.38090 7.41687 7.63232 7.77473 7.96337 8.12504 8.39280 9.01352 9.58608 11.08186 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046772 B = 0.004420 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.506730 B = 6334.014972 C = 6452.754317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.023 3.977 10 C -0.142 4.142 11 C 0.056 3.944 12 N -0.533 5.533 13 C 0.055 3.945 14 C -0.135 4.135 15 C 0.114 3.886 16 N -0.599 5.599 17 C 0.491 3.509 18 O -0.561 6.561 19 C 0.116 3.884 20 C 0.044 3.956 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.015 0.985 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -16.080 3.086 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.181 4.181 11 C -0.071 4.071 12 N -0.256 5.256 13 C -0.073 4.073 14 C -0.174 4.174 15 C -0.010 4.010 16 N -0.334 5.334 17 C 0.260 3.740 18 O -0.437 6.437 19 C -0.007 4.007 20 C -0.086 4.086 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.870 -16.560 2.517 18.954 hybrid contribution 0.902 1.935 0.264 2.151 sum 9.773 -14.625 2.781 17.808 Atomic orbital electron populations 1.69972 1.06047 1.26508 1.50865 1.25027 0.94836 0.99250 0.95323 0.86560 0.80068 0.83880 0.77634 1.19820 1.20960 1.20987 1.21276 0.92921 0.91161 1.50539 0.92881 1.19032 0.93890 0.91285 0.97214 1.22267 0.99868 0.95851 1.00161 1.22470 0.94199 0.88019 1.02442 1.61112 1.17687 1.45212 1.01548 1.20933 0.97656 0.96393 0.92364 1.21493 0.99969 0.97794 0.98110 1.21561 0.94279 1.00478 0.84722 1.48026 1.53311 1.14924 1.17090 1.22560 0.77579 0.83370 0.90477 1.90683 1.41731 1.77842 1.33431 1.21966 1.01659 0.88926 0.88101 1.22329 0.95483 0.95255 0.95493 0.93026 0.96575 0.96646 0.93522 0.93390 0.91116 0.91016 0.94539 0.91391 0.90424 0.91047 0.90725 0.90498 0.86338 0.92210 0.89158 0.89837 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.14 -2.83 4.64 -26.73 -0.12 -2.96 16 11 C 0.06 0.94 5.00 -3.82 -0.02 0.92 16 12 N -0.53 -7.61 4.37 -239.60 -1.05 -8.66 16 13 C 0.05 0.67 3.88 -6.81 -0.03 0.65 16 14 C -0.13 -1.22 6.02 -28.34 -0.17 -1.39 16 15 C 0.11 0.91 5.68 -3.99 -0.02 0.88 16 16 N -0.60 -6.45 2.53 -177.31 -0.45 -6.90 16 17 C 0.49 5.67 11.62 54.05 0.63 6.30 16 18 O -0.56 -9.16 16.45 5.55 0.09 -9.07 16 19 C 0.12 1.40 6.46 -2.80 -0.02 1.38 16 20 C 0.04 0.58 4.36 -4.43 -0.02 0.56 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.92 7.14 -51.93 -0.37 0.55 16 25 H 0.05 0.95 6.91 -51.93 -0.36 0.59 16 26 H 0.07 1.22 7.88 -51.93 -0.41 0.81 16 27 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.04 0.46 6.98 -51.93 -0.36 0.10 16 29 H 0.07 0.91 7.52 -51.93 -0.39 0.51 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.08 0.41 7.90 -51.93 -0.41 -0.01 16 34 H 0.12 0.88 7.96 -52.49 -0.42 0.47 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.28 6.97 -51.93 -0.36 0.91 16 37 H 0.08 1.16 7.06 -51.93 -0.37 0.79 16 38 H 0.04 0.56 7.14 -51.93 -0.37 0.19 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -32.87 301.12 -7.79 -40.66 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -6.32 Total: -4.28 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.32 Total: -6.69 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.76 Total: -41.74 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.87 -7.79 -40.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781560622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.566 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds