Wall clock time and date at job start Sun Mar 29 2020 22:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48501 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47009 * 299.99450 * 3 2 1 6 6 H 1.48501 * 109.47571 * 59.99644 * 3 2 1 7 7 C 1.37876 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99802 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46832 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.46638 * 182.85439 * 11 10 9 13 13 C 1.46260 * 111.00409 * 65.56801 * 12 11 10 14 14 C 1.47540 * 114.37901 * 148.54919 * 13 12 11 15 15 C 1.54946 * 109.73099 * 62.21724 * 14 13 12 16 16 N 1.44673 * 109.52967 * 290.52645 * 15 14 13 17 17 C 1.34773 * 118.54476 * 269.09987 * 16 15 14 18 18 O 1.21288 * 119.99835 * 179.97438 * 17 16 15 19 19 C 1.47779 * 122.90642 * 89.07659 * 16 15 14 20 20 C 1.44763 * 111.00159 * 302.07590 * 12 11 10 21 21 H 0.97005 * 120.00111 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47333 * 59.99698 * 9 7 2 23 23 H 1.09000 * 109.46976 * 299.99838 * 9 7 2 24 24 H 1.08999 * 109.47142 * 59.99633 * 10 9 7 25 25 H 1.09003 * 109.46575 * 299.99597 * 10 9 7 26 26 H 1.08994 * 109.47126 * 302.85255 * 11 10 9 27 27 H 1.08999 * 109.47053 * 62.85362 * 11 10 9 28 28 H 1.09001 * 108.50443 * 269.82081 * 13 12 11 29 29 H 1.09000 * 108.50087 * 27.44005 * 13 12 11 30 30 H 1.08998 * 109.42854 * 182.30099 * 14 13 12 31 31 H 1.09004 * 109.42446 * 302.19754 * 14 13 12 32 32 H 1.09006 * 109.46329 * 50.54618 * 15 14 13 33 33 H 1.09000 * 109.46312 * 170.51694 * 15 14 13 34 34 H 1.08002 * 120.00079 * 0.02562 * 17 16 15 35 35 H 1.08992 * 109.06639 * 78.65081 * 19 16 15 36 36 H 1.09003 * 109.06362 * 197.58289 * 19 16 15 37 37 H 1.09006 * 109.43450 * 337.92445 * 20 12 11 38 38 H 1.08995 * 109.43715 * 97.79448 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4335 -6.1027 0.0702 13 6 3.1496 -6.1024 1.3455 14 6 3.5317 -7.4427 1.8297 15 6 4.5038 -8.1056 0.8216 16 7 3.7910 -8.4324 -0.3942 17 6 3.2223 -9.6497 -0.4999 18 8 2.6180 -9.9513 -1.5073 19 6 3.6584 -7.4903 -1.5250 20 6 3.3644 -6.0590 -1.0376 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8721 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8895 26 1 0.8162 -5.0227 0.8647 27 1 0.8923 -5.0675 -0.9131 28 1 4.0538 -5.5039 1.2344 29 1 2.5158 -5.6329 2.0979 30 1 4.0212 -7.3519 2.7994 31 1 2.6388 -8.0598 1.9306 32 1 5.3156 -7.4153 0.5923 33 1 4.9140 -9.0164 1.2579 34 1 3.3040 -10.3563 0.3128 35 1 4.5861 -7.4881 -2.0972 36 1 2.8445 -7.8210 -2.1703 37 1 2.9308 -5.4801 -1.8531 38 1 4.2925 -5.5885 -0.7132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781560622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:31 Heat of formation + Delta-G solvation = -59.550406 kcal Electronic energy + Delta-G solvation = -17601.037581 eV Core-core repulsion = 14863.234023 eV Total energy + Delta-G solvation = -2737.803558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02375 -39.36643 -36.79749 -35.40187 -33.79638 -33.07341 -29.99144 -27.72057 -26.84011 -24.90068 -23.94267 -22.71604 -21.02866 -20.43902 -18.54892 -18.03997 -17.59944 -16.72228 -16.47478 -16.32560 -15.71170 -15.53127 -15.16859 -14.55784 -14.39160 -14.14438 -13.80523 -13.66998 -13.37784 -13.00539 -12.79788 -12.55999 -12.49717 -12.33830 -12.22744 -11.82676 -11.68195 -11.46080 -11.37476 -11.29327 -10.80450 -10.59075 -9.51772 -9.18942 -8.22217 -6.34670 1.37741 1.37990 1.51088 1.83646 2.28813 2.38245 2.99464 3.10229 3.89911 3.94707 3.98384 4.11392 4.15977 4.24191 4.39036 4.51909 4.55606 4.62303 4.68832 4.80405 4.83014 4.91049 4.99945 5.01166 5.06508 5.12736 5.19214 5.42004 5.46907 5.67048 5.67739 5.81269 6.11771 6.22917 6.28542 6.54553 6.82431 7.28006 7.35124 8.89017 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046772 B = 0.004420 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.506730 B = 6334.014972 C = 6452.754317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.122 4.122 11 C 0.068 3.932 12 N -0.535 5.535 13 C 0.051 3.949 14 C -0.129 4.129 15 C 0.112 3.888 16 N -0.599 5.599 17 C 0.487 3.513 18 O -0.616 6.616 19 C 0.121 3.879 20 C 0.046 3.954 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.009 1.009 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.170 0.830 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.944 -16.674 4.212 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.161 4.161 11 C -0.060 4.060 12 N -0.257 5.257 13 C -0.077 4.077 14 C -0.168 4.168 15 C -0.011 4.011 16 N -0.332 5.332 17 C 0.259 3.741 18 O -0.496 6.496 19 C -0.003 4.003 20 C -0.084 4.084 21 H 0.073 0.927 22 H 0.008 0.992 23 H 0.009 0.991 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.186 0.814 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.251 -17.159 3.673 20.845 hybrid contribution 0.163 2.124 -0.055 2.131 sum 11.414 -15.035 3.619 19.220 Atomic orbital electron populations 1.70105 1.07844 1.27747 1.51671 1.25991 0.95752 1.03409 0.94683 0.85401 0.79055 0.78759 0.77846 1.18568 1.20378 1.20269 1.21704 0.93378 0.92447 1.50532 0.92421 1.18942 0.94376 0.93154 0.94694 1.22025 0.98612 0.95172 1.00312 1.22216 0.94474 0.87558 1.01734 1.61205 1.18253 1.43183 1.03061 1.21098 0.96975 0.98771 0.90837 1.21475 1.00315 0.95425 0.99579 1.21805 0.93651 1.02488 0.83163 1.48193 1.52999 1.14431 1.17534 1.23440 0.76175 0.83875 0.90587 1.90669 1.44268 1.78879 1.35831 1.21798 1.01518 0.88291 0.88662 1.22329 0.95290 0.96106 0.94641 0.92742 0.99227 0.99090 0.93148 0.93175 0.91646 0.91968 0.94536 0.92776 0.87643 0.91659 0.90101 0.86533 0.81418 0.90418 0.91807 0.91187 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.12 -4.92 4.64 30.60 0.14 -4.77 16 11 C 0.07 2.35 5.00 86.30 0.43 2.78 16 12 N -0.53 -14.95 4.37 -911.94 -3.99 -18.94 16 13 C 0.05 1.17 3.88 84.72 0.33 1.50 16 14 C -0.13 -1.91 6.02 29.55 0.18 -1.73 16 15 C 0.11 1.33 5.68 87.39 0.50 1.83 16 16 N -0.60 -11.40 2.53 -833.26 -2.11 -13.51 16 17 C 0.49 10.16 11.62 129.79 1.51 11.67 16 18 O -0.62 -19.89 16.45 -3.05 -0.05 -19.94 16 19 C 0.12 2.79 6.46 86.48 0.56 3.35 16 20 C 0.05 1.16 4.36 87.05 0.38 1.54 16 21 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 22 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H 0.05 1.98 7.14 -2.39 -0.02 1.96 16 25 H 0.05 1.98 6.91 -2.39 -0.02 1.97 16 26 H 0.07 2.31 7.88 -2.39 -0.02 2.29 16 27 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 28 H 0.04 0.84 6.98 -2.39 -0.02 0.82 16 29 H 0.05 1.39 7.52 -2.39 -0.02 1.37 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 0.93 8.10 -2.38 -0.02 0.91 16 33 H 0.12 0.56 7.90 -2.39 -0.02 0.54 16 34 H 0.17 1.80 7.96 -2.91 -0.02 1.77 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.84 6.97 -2.39 -0.02 1.82 16 37 H 0.07 1.96 7.06 -2.38 -0.02 1.95 16 38 H 0.05 1.26 7.14 -2.39 -0.02 1.24 16 Total: -1.00 -73.05 301.12 2.04 -71.01 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.01 Total: 4.72 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.87 Total: -12.66 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -5.81 Total: -89.37 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -73.05 2.04 -71.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781560622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.464 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds