Wall clock time and date at job start Sun Mar 29 2020 22:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46993 * 2 1 4 4 C 1.37099 * 120.00266 * 87.12108 * 3 2 1 5 5 H 1.07999 * 119.99772 * 316.11089 * 4 3 2 6 6 C 1.38947 * 120.00308 * 136.11448 * 4 3 2 7 7 N 1.31418 * 120.00275 * 161.21064 * 6 4 3 8 8 Si 1.86805 * 119.99911 * 341.20300 * 6 4 3 9 9 H 1.48494 * 109.46833 * 94.86205 * 8 6 4 10 10 H 1.48492 * 109.47110 * 214.86332 * 8 6 4 11 11 H 1.48499 * 109.47068 * 334.86450 * 8 6 4 12 12 C 1.34777 * 120.00093 * 267.12247 * 3 2 1 13 13 O 1.21299 * 120.00104 * 180.02562 * 12 3 2 14 14 C 1.50701 * 119.99994 * 359.97438 * 12 3 2 15 15 H 1.09000 * 110.21463 * 41.93395 * 14 12 3 16 16 C 1.54479 * 110.24761 * 280.00327 * 14 12 3 17 17 C 1.54628 * 101.76692 * 215.58123 * 16 14 12 18 18 C 1.51283 * 104.19257 * 24.79729 * 17 16 14 19 19 O 1.21287 * 124.94208 * 163.71343 * 18 17 16 20 20 N 1.34424 * 110.11753 * 343.74896 * 18 17 16 21 21 C 1.46501 * 124.34929 * 179.59027 * 20 18 17 22 22 H 1.09004 * 109.47122 * 55.10882 * 1 2 3 23 23 H 1.09000 * 109.46893 * 175.11031 * 1 2 3 24 24 H 1.08998 * 109.47178 * 295.11325 * 1 2 3 25 25 H 1.08996 * 109.47263 * 119.99328 * 2 1 3 26 26 H 1.09004 * 109.47446 * 240.00191 * 2 1 3 27 27 H 0.96990 * 119.99738 * 179.97438 * 7 6 4 28 28 H 1.08997 * 110.96684 * 333.70262 * 16 14 12 29 29 H 1.09000 * 110.96852 * 97.42548 * 16 14 12 30 30 H 1.08992 * 110.48907 * 143.47291 * 17 16 14 31 31 H 1.08998 * 110.48605 * 266.12710 * 17 16 14 32 32 H 1.08997 * 109.47237 * 270.00330 * 21 20 18 33 33 H 1.09005 * 109.46807 * 30.00180 * 21 20 18 34 34 H 1.08999 * 109.46867 * 149.99309 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1906 2.0475 1.1858 5 1 1.4373 1.9810 1.9569 6 6 3.3342 2.8082 1.3955 7 7 3.3500 3.7253 2.3367 8 14 4.8495 2.5274 0.3397 9 1 4.8462 3.4848 -0.7953 10 1 6.0697 2.7359 1.1598 11 1 4.8369 1.1381 -0.1846 12 6 2.2982 1.9971 -1.1657 13 8 2.7029 3.1405 -1.1657 14 6 2.1094 1.2646 -2.4692 15 1 1.1809 0.6939 -2.4494 16 6 3.3080 0.3267 -2.7339 17 6 3.4507 0.4234 -4.2705 18 6 2.8411 1.7642 -4.6160 19 8 2.9985 2.3488 -5.6670 20 7 2.1003 2.2139 -3.5884 21 6 1.3768 3.4878 -3.5861 22 1 -0.3633 0.5879 -0.8430 23 1 -0.3633 -1.0239 -0.0876 24 1 -0.3633 0.4361 0.9305 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 4.1484 4.2560 2.4833 28 1 4.2059 0.6911 -2.2350 29 1 3.0801 -0.6938 -2.4262 30 1 4.5015 0.3966 -4.5585 31 1 2.9002 -0.3823 -4.7562 32 1 2.0242 4.2725 -3.1947 33 1 1.0778 3.7376 -4.6041 34 1 0.4903 3.4010 -2.9580 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783938016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:57 Heat of formation + Delta-G solvation = -48.021873 kcal Electronic energy + Delta-G solvation = -18514.302521 eV Core-core repulsion = 15641.165784 eV Total energy + Delta-G solvation = -2873.136737 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56412 -38.60561 -35.94165 -35.04303 -32.56739 -32.31032 -29.76419 -28.30377 -26.33729 -24.58612 -23.01196 -21.73876 -20.01942 -18.85605 -17.59314 -16.58337 -16.25547 -15.72954 -15.09336 -14.75765 -14.15810 -13.79733 -13.62040 -13.25326 -13.12335 -12.83407 -12.65352 -12.38545 -12.29766 -12.08455 -11.77250 -11.54362 -11.29125 -11.19263 -10.78029 -10.55773 -10.24015 -9.97228 -9.62403 -8.95794 -8.64627 -8.17879 -7.67016 -6.27283 -4.06019 2.76759 3.13880 3.27964 3.33739 3.57609 3.67906 4.26994 4.45306 4.46272 4.65314 4.95764 5.10434 5.11783 5.35696 5.45542 5.47725 5.61041 5.70943 5.81017 5.84586 5.89230 5.91364 6.07187 6.13717 6.31439 6.36802 6.61260 6.69181 7.34731 7.76726 7.90132 8.37305 8.67894 8.81017 9.33658 9.69154 10.78197 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.010957 C = 0.009507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.706525 B = 2554.933111 C = 2944.576670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.457 5.457 4 C -0.350 4.350 5 H 0.095 0.905 6 C 0.093 3.907 7 N -0.863 5.863 8 Si 0.905 3.095 9 H -0.256 1.256 10 H -0.306 1.306 11 H -0.277 1.277 12 C 0.440 3.560 13 O -0.532 6.532 14 C 0.113 3.887 15 H 0.096 0.904 16 C -0.129 4.129 17 C -0.152 4.152 18 C 0.516 3.484 19 O -0.544 6.544 20 N -0.593 5.593 21 C 0.105 3.895 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.273 0.727 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -10.196 -8.012 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.179 5.179 4 C -0.475 4.475 5 H 0.112 0.888 6 C -0.116 4.116 7 N -0.498 5.498 8 Si 0.736 3.264 9 H -0.182 1.182 10 H -0.235 1.235 11 H -0.203 1.203 12 C 0.228 3.772 13 O -0.413 6.413 14 C 0.005 3.995 15 H 0.114 0.886 16 C -0.167 4.167 17 C -0.192 4.192 18 C 0.304 3.696 19 O -0.422 6.422 20 N -0.326 5.326 21 C -0.037 4.037 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.819 -9.069 -8.417 12.690 hybrid contribution 0.674 -0.133 -0.161 0.706 sum -2.145 -9.202 -8.578 12.762 Atomic orbital electron populations 1.22147 0.96825 1.00695 1.02580 1.21690 0.94131 0.85444 1.01788 1.43649 1.59002 1.10194 1.05089 1.18764 1.05983 1.29892 0.92903 0.88765 1.25300 0.98452 0.93221 0.94644 1.69744 1.29326 1.18031 1.32681 0.86481 0.80150 0.78904 0.80888 1.18202 1.23470 1.20288 1.20327 0.84607 0.87585 0.84694 1.90569 1.47153 1.17734 1.85849 1.21764 1.00063 0.90328 0.87393 0.88635 1.22713 0.98547 1.00171 0.95239 1.22338 1.03561 0.96568 0.96734 1.20807 0.78296 0.87431 0.83113 1.90682 1.62184 1.63577 1.25749 1.47835 1.49165 1.20483 1.15083 1.21506 0.96367 0.84362 1.01420 0.93175 0.92660 0.91959 0.90393 0.92309 0.91747 0.89551 0.88424 0.88013 0.87695 0.91249 0.91543 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.10 37.16 0.38 -1.92 16 2 C 0.09 1.51 5.73 -4.04 -0.02 1.49 16 3 N -0.46 -10.09 2.14 -114.81 -0.25 -10.34 16 4 C -0.35 -9.38 9.68 -14.93 -0.14 -9.52 16 5 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 6 C 0.09 2.66 4.86 -17.47 -0.08 2.58 16 7 N -0.86 -25.86 13.96 55.50 0.77 -25.09 16 8 Si 0.91 23.41 24.64 -169.99 -4.19 19.22 16 9 H -0.26 -7.12 6.37 56.52 0.36 -6.76 16 10 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 11 H -0.28 -6.57 6.36 56.52 0.36 -6.21 16 12 C 0.44 9.73 4.79 -10.98 -0.05 9.68 16 13 O -0.53 -14.08 10.62 5.54 0.06 -14.02 16 14 C 0.11 1.90 2.75 -68.16 -0.19 1.71 16 15 H 0.10 1.34 6.64 -51.93 -0.34 1.00 16 16 C -0.13 -1.82 6.09 -25.10 -0.15 -1.97 16 17 C -0.15 -1.97 6.86 -26.74 -0.18 -2.15 16 18 C 0.52 9.07 8.02 -10.86 -0.09 8.99 16 19 O -0.54 -11.17 17.59 5.55 0.10 -11.07 16 20 N -0.59 -10.64 3.01 -174.02 -0.52 -11.16 16 21 C 0.10 1.83 9.57 59.85 0.57 2.40 16 22 H 0.05 0.70 7.57 -51.93 -0.39 0.31 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 26 H 0.06 0.77 4.98 -51.93 -0.26 0.51 16 27 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 28 H 0.09 1.45 6.93 -51.93 -0.36 1.09 16 29 H 0.10 1.03 7.03 -51.93 -0.36 0.66 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.37 7.46 -51.93 -0.39 0.98 16 33 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 273.92 15.07 4.13 4.13 Total: -1.00 -34.44 273.92 -4.56 -39.00 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.69 Total: -1.95 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 0.03 Total: 11.28 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.01 Total: -46.59 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.16 Total: -25.09 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.19 Total: 19.22 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.44 -4.56 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783938016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.021 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds