Wall clock time and date at job start Sun Mar 29 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47142 * 179.97438 * 7 6 4 9 9 H 1.07997 * 120.00013 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99843 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00058 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99806 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47057 * 90.00275 * 12 10 8 14 14 H 1.48508 * 109.47034 * 210.00302 * 12 10 8 15 15 H 1.48500 * 109.47389 * 330.00294 * 12 10 8 16 16 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 17 17 O 1.21284 * 119.99754 * 180.27842 * 16 2 1 18 18 C 1.50696 * 120.00137 * 0.28058 * 16 2 1 19 19 C 1.53001 * 117.49887 * 248.61985 * 18 16 2 20 20 C 1.52994 * 59.99933 * 252.50574 * 19 18 16 21 21 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 22 22 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 23 23 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 24 24 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 25 25 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 26 26 H 0.97000 * 119.99813 * 0.02562 * 6 4 3 27 27 H 1.08997 * 109.47383 * 300.00029 * 7 6 4 28 28 H 1.09000 * 109.47008 * 60.00245 * 7 6 4 29 29 H 0.97000 * 119.99660 * 179.97438 * 11 10 8 30 30 H 1.09004 * 115.54642 * 34.32831 * 18 16 2 31 31 H 1.09001 * 117.49733 * 0.02562 * 19 18 16 32 32 H 1.08997 * 117.49999 * 145.01700 * 19 18 16 33 33 H 1.09004 * 117.50553 * 252.50777 * 20 19 18 34 34 H 1.09012 * 117.51513 * 107.47863 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 4.1199 4.5729 -3.0484 9 1 4.3861 5.0427 -2.1131 10 6 4.4695 5.1670 -4.2425 11 7 4.1458 4.5946 -5.3814 12 14 5.4030 6.7851 -4.2425 13 1 6.8631 6.5142 -4.2356 14 1 5.0491 7.5607 -5.4585 15 1 5.0389 7.5667 -3.0335 16 6 2.1388 -1.1672 0.0057 17 8 3.3517 -1.1672 0.0108 18 6 1.3854 -2.4723 0.0058 19 6 1.4552 -3.3283 1.2720 20 6 2.2073 -3.7627 0.0124 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8898 0.5139 23 1 -0.3633 0.8901 0.5138 24 1 1.6063 2.0296 0.5094 25 1 3.1478 1.1396 0.5181 26 1 3.4299 3.3951 -0.9299 27 1 3.9587 2.5066 -3.5581 28 1 2.4169 3.3961 -3.5662 29 1 4.3914 5.0128 -6.2214 30 1 0.4493 -2.4747 -0.5528 31 1 2.0459 -2.9473 2.1051 32 1 0.5650 -3.8940 1.5468 33 1 1.8120 -4.6142 -0.5415 34 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787620951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:54 Heat of formation + Delta-G solvation = -46.513136 kcal Electronic energy + Delta-G solvation = -16893.990485 eV Core-core repulsion = 14020.919171 eV Total energy + Delta-G solvation = -2873.071314 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19364 -38.53346 -36.26306 -35.28086 -34.09822 -32.32433 -29.35948 -27.00769 -26.45961 -23.82740 -22.58926 -22.26172 -19.85577 -18.92792 -17.56307 -17.23736 -16.26680 -15.84104 -15.20521 -14.98413 -14.59375 -14.39745 -14.12832 -13.55592 -12.97780 -12.67869 -12.65164 -12.42453 -12.13346 -11.93861 -11.68361 -11.38391 -10.97274 -10.86099 -10.75368 -10.60089 -10.30944 -9.76986 -9.45964 -9.38234 -8.72160 -8.42216 -7.86674 -6.15088 -4.22087 2.50953 2.94556 3.25606 3.31407 3.33803 3.36943 3.74005 4.17830 4.39726 4.44376 4.65404 4.75340 4.98537 5.06646 5.20872 5.28945 5.37916 5.39612 5.53180 5.56739 5.66022 5.74515 5.79386 6.00076 6.40379 7.31990 7.38087 7.45164 7.53870 7.67883 7.98469 8.24366 8.63721 8.79424 9.11147 9.44452 10.95205 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.053347 B = 0.004304 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.736450 B = 6503.317161 C = 6587.912587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.595 5.595 3 C 0.095 3.905 4 C 0.482 3.518 5 O -0.549 6.549 6 N -0.711 5.711 7 C 0.251 3.749 8 C -0.543 4.543 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.905 3.095 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.549 3.451 17 O -0.537 6.537 18 C -0.189 4.189 19 C -0.154 4.154 20 C -0.148 4.148 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.391 0.609 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.266 0.734 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 -10.713 14.568 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.327 5.327 3 C -0.032 4.032 4 C 0.265 3.735 5 O -0.427 6.427 6 N -0.361 5.361 7 C 0.130 3.870 8 C -0.581 4.581 9 H 0.082 0.918 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.732 3.268 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.337 3.663 17 O -0.414 6.414 18 C -0.210 4.210 19 C -0.192 4.192 20 C -0.186 4.186 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.223 0.777 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.118 -11.157 13.672 19.424 hybrid contribution 0.496 1.324 0.036 1.415 sum -7.622 -9.832 13.707 18.511 Atomic orbital electron populations 1.21831 0.78987 1.02803 1.02547 1.47220 1.07088 1.04972 1.73405 1.21402 0.99631 0.86069 0.96114 1.20919 0.79382 0.82010 0.91142 1.90648 1.52120 1.53898 1.46034 1.46429 1.55681 1.22179 1.11770 1.19093 0.96666 0.94846 0.76417 1.21233 1.37598 1.06233 0.93071 0.91848 1.24961 0.95800 0.98082 0.95208 1.69981 1.45645 1.39206 0.97508 0.86403 0.79991 0.82770 0.77669 1.20439 1.21014 1.19728 1.19604 0.87245 0.84283 0.75176 1.90693 1.13926 1.87135 1.49649 1.22179 1.02857 0.90777 1.05222 1.22925 1.03140 1.01702 0.91417 1.22955 1.00199 0.95400 1.00006 0.91984 0.90799 0.91037 0.87912 0.87392 0.77700 0.95614 0.95605 0.92458 0.85735 0.88346 0.87897 0.87938 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.05 59.85 0.60 1.44 16 2 N -0.59 -8.59 2.36 -182.95 -0.43 -9.02 16 3 C 0.09 1.42 5.93 -5.19 -0.03 1.39 16 4 C 0.48 10.05 7.90 -10.99 -0.09 9.96 16 5 O -0.55 -13.81 16.43 5.56 0.09 -13.72 16 6 N -0.71 -15.44 5.55 -61.47 -0.34 -15.78 16 7 C 0.25 6.84 5.43 -5.19 -0.03 6.81 16 8 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 9 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 12 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 C 0.55 8.71 7.46 -10.99 -0.08 8.63 16 17 O -0.54 -10.64 15.84 5.55 0.09 -10.55 16 18 C -0.19 -2.19 4.79 -91.77 -0.44 -2.63 16 19 C -0.15 -1.35 10.23 -26.73 -0.27 -1.62 16 20 C -0.15 -1.56 10.04 -26.74 -0.27 -1.83 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.56 6.64 -51.93 -0.34 0.21 16 23 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 24 H 0.10 1.13 7.89 -51.93 -0.41 0.72 16 25 H 0.11 1.60 7.42 -51.93 -0.39 1.22 16 26 H 0.39 7.14 8.32 -40.82 -0.34 6.80 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.12 1.22 7.27 -51.93 -0.38 0.85 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 1.33 7.67 -51.92 -0.40 0.94 16 LS Contribution 298.75 15.07 4.50 4.50 Total: -1.00 -36.24 298.75 -6.14 -42.38 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.73 Total: 3.43 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.02 Total: 8.50 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.04 Total: -50.63 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.18 Total: -24.27 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.24 -6.14 -42.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.138 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds