Wall clock time and date at job start Sun Mar 29 2020 22:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47142 * 179.97438 * 7 6 4 9 9 H 1.07997 * 120.00013 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99843 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00058 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99806 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47057 * 90.00275 * 12 10 8 14 14 H 1.48508 * 109.47034 * 210.00302 * 12 10 8 15 15 H 1.48500 * 109.47389 * 330.00294 * 12 10 8 16 16 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 17 17 O 1.21284 * 119.99754 * 180.27842 * 16 2 1 18 18 C 1.50696 * 120.00137 * 0.28058 * 16 2 1 19 19 C 1.53001 * 117.49887 * 248.61985 * 18 16 2 20 20 C 1.52994 * 59.99933 * 252.50574 * 19 18 16 21 21 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 22 22 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 23 23 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 24 24 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 25 25 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 26 26 H 0.97000 * 119.99813 * 0.02562 * 6 4 3 27 27 H 1.08997 * 109.47383 * 300.00029 * 7 6 4 28 28 H 1.09000 * 109.47008 * 60.00245 * 7 6 4 29 29 H 0.97000 * 119.99660 * 179.97438 * 11 10 8 30 30 H 1.09004 * 115.54642 * 34.32831 * 18 16 2 31 31 H 1.09001 * 117.49733 * 0.02562 * 19 18 16 32 32 H 1.08997 * 117.49999 * 145.01700 * 19 18 16 33 33 H 1.09004 * 117.50553 * 252.50777 * 20 19 18 34 34 H 1.09012 * 117.51513 * 107.47863 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 4.1199 4.5729 -3.0484 9 1 4.3861 5.0427 -2.1131 10 6 4.4695 5.1670 -4.2425 11 7 4.1458 4.5946 -5.3814 12 14 5.4030 6.7851 -4.2425 13 1 6.8631 6.5142 -4.2356 14 1 5.0491 7.5607 -5.4585 15 1 5.0389 7.5667 -3.0335 16 6 2.1388 -1.1672 0.0057 17 8 3.3517 -1.1672 0.0108 18 6 1.3854 -2.4723 0.0058 19 6 1.4552 -3.3283 1.2720 20 6 2.2073 -3.7627 0.0124 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8898 0.5139 23 1 -0.3633 0.8901 0.5138 24 1 1.6063 2.0296 0.5094 25 1 3.1478 1.1396 0.5181 26 1 3.4299 3.3951 -0.9299 27 1 3.9587 2.5066 -3.5581 28 1 2.4169 3.3961 -3.5662 29 1 4.3914 5.0128 -6.2214 30 1 0.4493 -2.4747 -0.5528 31 1 2.0459 -2.9473 2.1051 32 1 0.5650 -3.8940 1.5468 33 1 1.8120 -4.6142 -0.5415 34 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787620951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:53 Heat of formation + Delta-G solvation = -73.970347 kcal Electronic energy + Delta-G solvation = -16895.181119 eV Core-core repulsion = 14020.919171 eV Total energy + Delta-G solvation = -2874.261948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43627 -40.15590 -37.22205 -36.54911 -36.05715 -34.39538 -30.83977 -28.78545 -27.53571 -25.27491 -23.99509 -23.30702 -21.58810 -20.06900 -19.12419 -18.51174 -17.74473 -17.53834 -16.77907 -16.42498 -16.14434 -15.81858 -15.47685 -14.86347 -14.48149 -14.16709 -14.04583 -13.83750 -13.54121 -13.24179 -12.94886 -12.84890 -12.68996 -12.42326 -12.24375 -11.56145 -11.51804 -11.42464 -11.13013 -10.93731 -10.83100 -9.88599 -9.73743 -8.31465 -6.48877 1.35682 1.42093 1.44821 1.56111 1.69214 1.88419 2.33117 2.63618 2.92195 3.03311 3.51034 3.81387 3.93116 3.99172 4.12653 4.27355 4.32555 4.36720 4.68260 4.73771 4.88090 4.94503 5.02599 5.05483 5.18702 5.22836 5.35001 5.44943 5.66022 5.81274 6.28663 6.61963 6.83408 7.09213 7.20541 7.43893 8.80996 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.053347 B = 0.004304 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.736450 B = 6503.317161 C = 6587.912587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.598 5.598 3 C 0.105 3.895 4 C 0.476 3.524 5 O -0.599 6.599 6 N -0.706 5.706 7 C 0.267 3.733 8 C -0.557 4.557 9 H 0.086 0.914 10 C 0.002 3.998 11 N -0.933 5.933 12 Si 0.988 3.012 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.252 1.252 16 C 0.533 3.467 17 O -0.591 6.591 18 C -0.205 4.205 19 C -0.121 4.121 20 C -0.162 4.162 21 H 0.043 0.957 22 H 0.106 0.894 23 H 0.099 0.901 24 H 0.155 0.845 25 H 0.112 0.888 26 H 0.410 0.590 27 H -0.022 1.022 28 H -0.010 1.010 29 H 0.269 0.731 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 -10.056 17.073 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.328 5.328 3 C -0.022 4.022 4 C 0.262 3.738 5 O -0.480 6.480 6 N -0.356 5.356 7 C 0.144 3.856 8 C -0.595 4.595 9 H 0.104 0.896 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.811 3.189 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.176 1.176 16 C 0.324 3.676 17 O -0.472 6.472 18 C -0.226 4.226 19 C -0.158 4.158 20 C -0.199 4.199 21 H 0.062 0.938 22 H 0.124 0.876 23 H 0.117 0.883 24 H 0.172 0.828 25 H 0.130 0.870 26 H 0.246 0.754 27 H -0.004 1.004 28 H 0.008 0.992 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.148 -10.495 16.242 21.393 hybrid contribution 0.767 1.046 -0.764 1.505 sum -8.381 -9.450 15.478 19.978 Atomic orbital electron populations 1.22119 0.76355 1.05886 1.02286 1.47498 1.08819 1.04308 1.72211 1.21451 1.01321 0.87867 0.91577 1.22103 0.77552 0.80673 0.93425 1.90619 1.53855 1.55131 1.48414 1.46172 1.56137 1.23191 1.10122 1.18520 0.94100 0.94054 0.78879 1.21633 1.37473 1.06123 0.94253 0.89579 1.26121 0.96596 1.02459 0.94557 1.70150 1.47066 1.41420 0.98489 0.85112 0.78172 0.77292 0.78360 1.19801 1.20805 1.17574 1.20497 0.87038 0.86059 0.74011 1.90658 1.16304 1.88061 1.52160 1.22243 1.03268 0.88837 1.08206 1.23061 1.03589 0.99362 0.89811 1.23033 0.98851 0.95722 1.02315 0.93837 0.87559 0.88274 0.82777 0.86978 0.75388 1.00400 0.99214 0.92218 0.83748 0.88863 0.84151 0.85596 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 10.05 127.77 1.28 2.63 16 2 N -0.60 -16.45 2.36 -851.13 -2.01 -18.46 16 3 C 0.10 2.98 5.93 85.63 0.51 3.49 16 4 C 0.48 20.14 7.90 87.66 0.69 20.83 16 5 O -0.60 -31.44 16.43 -3.03 -0.05 -31.49 16 6 N -0.71 -31.08 5.55 -466.79 -2.59 -33.67 16 7 C 0.27 15.28 5.43 85.64 0.46 15.75 16 8 C -0.56 -31.06 9.28 25.60 0.24 -30.82 16 9 H 0.09 4.30 7.60 -2.91 -0.02 4.28 16 10 C 0.00 0.12 5.46 84.65 0.46 0.58 16 11 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 12 Si 0.99 42.96 29.54 68.60 2.03 44.99 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 16 C 0.53 16.78 7.46 87.66 0.65 17.44 16 17 O -0.59 -24.12 15.84 -3.04 -0.05 -24.16 16 18 C -0.20 -4.40 4.79 -11.54 -0.06 -4.46 16 19 C -0.12 -1.77 10.23 30.59 0.31 -1.45 16 20 C -0.16 -3.24 10.04 30.59 0.31 -2.93 16 21 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.11 1.21 6.64 -2.39 -0.02 1.20 16 23 H 0.10 1.24 7.89 -2.39 -0.02 1.22 16 24 H 0.15 2.81 7.89 -2.39 -0.02 2.79 16 25 H 0.11 3.20 7.42 -2.39 -0.02 3.18 16 26 H 0.41 14.62 8.32 -92.71 -0.77 13.85 16 27 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.14 2.48 7.27 -2.39 -0.02 2.46 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.08 2.05 7.67 -2.38 -0.02 2.03 16 Total: -1.00 -84.60 298.75 2.81 -81.79 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.33 Total: 17.24 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 4.87 Total: 21.05 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -4.31 Total: -109.41 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -0.10 Total: -55.66 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -84.60 2.81 -81.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.815 kcal (2) G-P(sol) polarization free energy of solvation -84.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds