Wall clock time and date at job start Sun Mar 29 2020 22:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47530 * 2 1 4 4 O 1.45207 * 109.46782 * 120.00091 * 2 1 3 5 5 C 1.34223 * 116.99684 * 269.99359 * 4 2 1 6 6 O 1.20830 * 120.00380 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00053 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47546 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47319 * 180.02562 * 8 7 5 10 10 C 1.52993 * 109.46968 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47194 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00143 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00557 * 179.97438 * 11 10 9 14 14 N 1.31524 * 119.99785 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00314 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46813 * 60.00723 * 15 13 11 17 17 H 1.48500 * 109.46854 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47377 * 299.99977 * 15 13 11 19 19 C 1.53001 * 109.47252 * 239.99683 * 2 1 3 20 20 C 1.53000 * 117.50223 * 180.02562 * 19 2 1 21 21 C 1.52997 * 117.49889 * 111.37590 * 19 2 1 22 22 H 1.08997 * 109.46713 * 300.00166 * 1 2 3 23 23 H 1.08997 * 109.46835 * 60.00324 * 1 2 3 24 24 H 1.08994 * 109.46791 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47234 * 300.00598 * 7 5 4 26 26 H 1.08999 * 109.47224 * 60.00076 * 7 5 4 27 27 H 1.08999 * 109.46599 * 300.00371 * 8 7 5 28 28 H 1.09003 * 109.46465 * 60.00066 * 8 7 5 29 29 H 1.09000 * 109.46747 * 299.99918 * 9 8 7 30 30 H 1.08992 * 109.47071 * 59.99829 * 9 8 7 31 31 H 1.08994 * 109.47367 * 300.00210 * 10 9 8 32 32 H 1.09006 * 109.47234 * 59.99917 * 10 9 8 33 33 H 0.96992 * 119.99908 * 179.97438 * 14 13 11 34 34 H 1.09002 * 115.55911 * 325.69018 * 19 2 1 35 35 H 1.08990 * 117.49990 * 145.01974 * 20 19 2 36 36 H 1.09004 * 117.49237 * 359.97438 * 20 19 2 37 37 H 1.08999 * 117.49685 * 0.02562 * 21 19 2 38 38 H 1.08999 * 117.52022 * 214.97106 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0640 2.2811 6 8 1.9975 1.2517 2.2506 7 6 2.7193 -0.5770 3.5492 8 6 2.8633 0.4890 4.6372 9 6 3.3737 -0.1617 5.9245 10 6 3.5171 0.9042 7.0126 11 6 4.0192 0.2633 8.2806 12 1 4.2167 -0.7982 8.3077 13 6 4.2274 1.0319 9.4061 14 7 3.9874 2.3247 9.3731 15 14 4.8492 0.2372 10.9781 16 1 6.1696 -0.3934 10.7252 17 1 4.9896 1.2721 12.0339 18 1 3.8833 -0.7984 11.4248 19 6 2.0401 -0.7213 -1.2492 20 6 3.5551 -0.8287 -1.4340 21 6 2.7419 0.1225 -2.3151 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 2.0104 -1.3372 3.8774 26 1 3.6884 -1.0400 3.3632 27 1 3.5720 1.2495 4.3091 28 1 1.8940 0.9516 4.8230 29 1 2.6653 -0.9224 6.2526 30 1 4.3430 -0.6240 5.7382 31 1 4.2251 1.6653 6.6847 32 1 2.5475 1.3662 7.1987 33 1 4.1335 2.8654 10.1650 34 1 1.4311 -1.5584 -1.5905 35 1 3.9425 -1.7361 -1.8970 36 1 4.1884 -0.3851 -0.6657 37 1 2.8407 1.1914 -2.1262 38 1 2.5951 -0.1593 -3.3578 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805865026.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:52 Heat of formation + Delta-G solvation = -96.597411 kcal Electronic energy + Delta-G solvation = -16618.753555 eV Core-core repulsion = 13847.050768 eV Total energy + Delta-G solvation = -2771.702787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57436 -38.03887 -36.10500 -34.94511 -32.69188 -31.53718 -29.78544 -26.03407 -24.43819 -22.77279 -22.58195 -20.82772 -20.36364 -20.00095 -17.60261 -16.66231 -16.21261 -16.11942 -15.52411 -14.72823 -14.55562 -14.40999 -13.53701 -13.18801 -12.82802 -12.63325 -12.25736 -12.14681 -11.88889 -11.74710 -11.64455 -11.25181 -11.01934 -10.98560 -10.70575 -10.57409 -10.55802 -10.44760 -10.37501 -10.20591 -9.63654 -9.27298 -9.02166 -8.30676 -5.95663 -3.98350 2.33781 2.56945 3.35639 3.39932 3.42261 3.58711 4.20322 4.48821 4.50411 4.60949 4.75599 4.81617 5.01795 5.13894 5.24432 5.30302 5.31450 5.39736 5.48671 5.56057 5.62285 5.73801 5.78439 5.81111 5.93647 6.07519 6.22095 6.46101 6.53337 6.78167 6.96356 7.17354 7.72715 7.87990 7.88312 8.05231 8.46892 9.09075 9.65400 11.15688 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.057840 B = 0.003284 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.980554 B = 8523.029221 C = 8645.792140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 H 0.085 0.915 4 O -0.354 6.354 5 C 0.458 3.542 6 O -0.507 6.507 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.157 4.157 20 C -0.168 4.168 21 C -0.171 4.171 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 -6.972 -22.095 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.058 3.942 3 H 0.103 0.897 4 O -0.271 6.271 5 C 0.302 3.698 6 O -0.394 6.394 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.175 4.175 20 C -0.205 4.205 21 C -0.208 4.208 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.505 -6.439 -22.026 23.386 hybrid contribution 0.259 -0.257 0.839 0.915 sum -4.247 -6.696 -21.187 22.622 Atomic orbital electron populations 1.22149 0.93942 1.03015 1.03126 1.22183 0.94439 0.96274 0.81337 0.89743 1.86605 1.77166 1.42900 1.20475 1.24220 0.74039 0.86168 0.85393 1.90654 1.47843 1.16878 1.84068 1.21605 1.03276 1.00902 0.89183 1.21573 1.02634 0.96539 0.93826 1.21649 0.99383 0.99787 0.93943 1.19089 0.97174 0.93488 0.91922 1.21244 1.44057 0.94542 0.96146 0.92740 1.25041 0.95720 0.94844 0.98938 1.69965 1.49097 1.05023 1.29432 0.86659 0.79386 0.78942 0.83006 1.20264 1.21319 1.20261 1.22317 0.96329 1.02761 0.96075 1.22896 0.93179 1.01721 1.02702 1.23056 1.03823 0.97872 0.96091 0.91717 0.90722 0.91511 0.87939 0.87960 0.91600 0.91578 0.93213 0.93215 0.96562 0.96563 0.92969 0.86856 0.88325 0.88550 0.88515 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.53 37.16 0.35 -1.22 16 2 C 0.11 1.23 2.76 -26.73 -0.07 1.16 16 3 H 0.08 1.03 6.91 -51.93 -0.36 0.67 16 4 O -0.35 -4.58 9.80 -39.24 -0.38 -4.96 16 5 C 0.46 6.75 7.93 36.00 0.29 7.04 16 6 O -0.51 -8.94 15.20 -18.75 -0.29 -9.22 16 7 C -0.11 -1.54 5.81 -27.88 -0.16 -1.70 16 8 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 9 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 10 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 11 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 12 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C -0.16 -1.36 5.40 -90.62 -0.49 -1.85 16 20 C -0.17 -1.41 10.16 -26.71 -0.27 -1.68 16 21 C -0.17 -1.26 10.18 -26.71 -0.27 -1.54 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 28 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.72 8.05 -51.93 -0.42 0.31 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -32.11 323.14 -8.17 -40.29 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.65 Total: -3.48 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.44 Total: -17.60 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.78 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.67 Total: -14.18 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.11 -8.17 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805865026.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.310 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds