Wall clock time and date at job start Sun Mar 29 2020 22:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47530 * 2 1 4 4 O 1.45207 * 109.46782 * 120.00091 * 2 1 3 5 5 C 1.34223 * 116.99684 * 269.99359 * 4 2 1 6 6 O 1.20830 * 120.00380 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00053 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47546 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47319 * 180.02562 * 8 7 5 10 10 C 1.52993 * 109.46968 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47194 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00143 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00557 * 179.97438 * 11 10 9 14 14 N 1.31524 * 119.99785 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00314 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46813 * 60.00723 * 15 13 11 17 17 H 1.48500 * 109.46854 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47377 * 299.99977 * 15 13 11 19 19 C 1.53001 * 109.47252 * 239.99683 * 2 1 3 20 20 C 1.53000 * 117.50223 * 180.02562 * 19 2 1 21 21 C 1.52997 * 117.49889 * 111.37590 * 19 2 1 22 22 H 1.08997 * 109.46713 * 300.00166 * 1 2 3 23 23 H 1.08997 * 109.46835 * 60.00324 * 1 2 3 24 24 H 1.08994 * 109.46791 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47234 * 300.00598 * 7 5 4 26 26 H 1.08999 * 109.47224 * 60.00076 * 7 5 4 27 27 H 1.08999 * 109.46599 * 300.00371 * 8 7 5 28 28 H 1.09003 * 109.46465 * 60.00066 * 8 7 5 29 29 H 1.09000 * 109.46747 * 299.99918 * 9 8 7 30 30 H 1.08992 * 109.47071 * 59.99829 * 9 8 7 31 31 H 1.08994 * 109.47367 * 300.00210 * 10 9 8 32 32 H 1.09006 * 109.47234 * 59.99917 * 10 9 8 33 33 H 0.96992 * 119.99908 * 179.97438 * 14 13 11 34 34 H 1.09002 * 115.55911 * 325.69018 * 19 2 1 35 35 H 1.08990 * 117.49990 * 145.01974 * 20 19 2 36 36 H 1.09004 * 117.49237 * 359.97438 * 20 19 2 37 37 H 1.08999 * 117.49685 * 0.02562 * 21 19 2 38 38 H 1.08999 * 117.52022 * 214.97106 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0640 2.2811 6 8 1.9975 1.2517 2.2506 7 6 2.7193 -0.5770 3.5492 8 6 2.8633 0.4890 4.6372 9 6 3.3737 -0.1617 5.9245 10 6 3.5171 0.9042 7.0126 11 6 4.0192 0.2633 8.2806 12 1 4.2167 -0.7982 8.3077 13 6 4.2274 1.0319 9.4061 14 7 3.9874 2.3247 9.3731 15 14 4.8492 0.2372 10.9781 16 1 6.1696 -0.3934 10.7252 17 1 4.9896 1.2721 12.0339 18 1 3.8833 -0.7984 11.4248 19 6 2.0401 -0.7213 -1.2492 20 6 3.5551 -0.8287 -1.4340 21 6 2.7419 0.1225 -2.3151 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 2.0104 -1.3372 3.8774 26 1 3.6884 -1.0400 3.3632 27 1 3.5720 1.2495 4.3091 28 1 1.8940 0.9516 4.8230 29 1 2.6653 -0.9224 6.2526 30 1 4.3430 -0.6240 5.7382 31 1 4.2251 1.6653 6.6847 32 1 2.5475 1.3662 7.1987 33 1 4.1335 2.8654 10.1650 34 1 1.4311 -1.5584 -1.5905 35 1 3.9425 -1.7361 -1.8970 36 1 4.1884 -0.3851 -0.6657 37 1 2.8407 1.1914 -2.1262 38 1 2.5951 -0.1593 -3.3578 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805865026.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:52 Heat of formation + Delta-G solvation = -113.451903 kcal Electronic energy + Delta-G solvation = -16619.484421 eV Core-core repulsion = 13847.050768 eV Total energy + Delta-G solvation = -2772.433653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.67690 -38.90796 -37.13086 -36.58575 -34.66762 -32.48599 -31.43937 -27.78168 -25.51337 -24.23919 -23.28558 -22.07248 -21.52719 -21.33691 -18.74363 -18.38260 -17.68505 -17.28540 -16.51424 -16.31946 -15.89247 -15.54910 -14.65393 -14.46083 -14.31991 -13.78241 -13.64005 -13.48099 -13.33263 -12.94766 -12.80348 -12.47837 -12.39173 -12.21202 -12.19558 -12.05720 -11.90062 -11.67575 -11.39769 -11.33555 -11.20915 -11.09513 -10.99979 -10.54001 -8.18600 -6.30649 1.18271 1.40900 1.44771 1.52505 1.58622 2.42365 2.89755 3.14275 3.46939 3.72336 3.79851 3.95133 3.98739 4.06672 4.09306 4.22853 4.42121 4.49825 4.62942 4.74243 4.76203 4.77125 4.78866 4.86663 4.98635 5.06479 5.13455 5.19699 5.20274 5.29802 5.31903 5.48362 5.56587 5.77363 5.88010 6.25400 6.75371 6.87726 7.39024 8.93476 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.057840 B = 0.003284 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.980554 B = 8523.029221 C = 8645.792140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.104 3.896 3 H 0.066 0.934 4 O -0.350 6.350 5 C 0.462 3.538 6 O -0.545 6.545 7 C -0.103 4.103 8 C -0.100 4.100 9 C -0.096 4.096 10 C 0.019 3.981 11 C -0.544 4.544 12 H 0.066 0.934 13 C -0.006 4.006 14 N -0.938 5.938 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.265 1.265 19 C -0.161 4.161 20 C -0.176 4.176 21 C -0.160 4.160 22 H 0.043 0.957 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.063 0.937 31 H -0.014 1.014 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 -9.404 -22.955 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.084 0.916 4 O -0.267 6.267 5 C 0.307 3.693 6 O -0.435 6.435 7 C -0.140 4.140 8 C -0.137 4.137 9 C -0.134 4.134 10 C -0.018 4.018 11 C -0.581 4.581 12 H 0.084 0.916 13 C -0.203 4.203 14 N -0.578 5.578 15 Si 0.793 3.207 16 H -0.189 1.189 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.179 4.179 20 C -0.213 4.213 21 C -0.197 4.197 22 H 0.063 0.937 23 H 0.113 0.887 24 H 0.098 0.902 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.005 0.995 32 H 0.005 0.995 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.339 -8.901 -22.911 24.959 hybrid contribution 0.190 0.546 1.044 1.194 sum -4.148 -8.354 -21.866 23.773 Atomic orbital electron populations 1.22143 0.92783 1.03813 1.03113 1.22443 0.95488 0.95653 0.81472 0.91622 1.86585 1.76849 1.42661 1.20599 1.24334 0.73221 0.85636 0.86061 1.90650 1.49620 1.18494 1.84724 1.21496 1.05420 0.99707 0.87418 1.21349 1.01085 0.97231 0.94082 1.21441 1.00703 0.98119 0.93096 1.19044 0.94547 0.94447 0.93753 1.21738 1.43988 0.95280 0.97133 0.91555 1.26078 0.95798 0.95351 1.03088 1.70122 1.50265 1.06801 1.30644 0.85446 0.79290 0.78051 0.77939 1.18933 1.21084 1.18927 1.22347 0.96668 1.03555 0.95347 1.22953 0.92770 1.02728 1.02867 1.23150 1.02275 0.97416 0.96872 0.93745 0.88745 0.90238 0.85362 0.85425 0.93235 0.93186 0.91822 0.91836 0.99544 0.99541 0.92839 0.85163 0.86729 0.90230 0.89076 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.53 71.98 0.69 -2.20 16 2 C 0.10 2.19 2.76 30.60 0.08 2.28 16 3 H 0.07 1.64 6.91 -2.39 -0.02 1.62 16 4 O -0.35 -8.67 9.80 -51.35 -0.50 -9.17 16 5 C 0.46 13.39 7.93 71.24 0.56 13.95 16 6 O -0.54 -19.68 15.20 21.95 0.33 -19.34 16 7 C -0.10 -2.66 5.81 29.85 0.17 -2.49 16 8 C -0.10 -3.52 4.50 30.60 0.14 -3.38 16 9 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 10 C 0.02 1.04 4.97 29.85 0.15 1.19 16 11 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 13 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 14 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 15 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 C -0.16 -2.49 5.40 -10.79 -0.06 -2.55 16 20 C -0.18 -2.67 10.16 30.61 0.31 -2.36 16 21 C -0.16 -2.05 10.18 30.61 0.31 -1.74 16 22 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 28 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 33 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.13 1.59 8.11 -2.39 -0.02 1.57 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.09 1.27 8.05 -2.39 -0.02 1.25 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.76 323.14 6.36 -64.41 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.00 Total: 8.05 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 3.21 Total: -32.09 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.28 Total: -58.62 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.17 Total: -28.51 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.76 6.36 -64.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805865026.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.043 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds