Wall clock time and date at job start Sun Mar 29 2020 22:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41606 * 113.99895 * 2 1 4 4 C 1.29266 * 119.99854 * 180.02562 * 3 2 1 5 5 C 1.47597 * 119.99870 * 180.02562 * 4 3 2 6 6 O 1.21559 * 119.99696 * 354.76779 * 5 4 3 7 7 N 1.34773 * 119.99680 * 174.77350 * 5 4 3 8 8 C 1.46921 * 120.63251 * 4.81968 * 7 5 4 9 9 C 1.52768 * 109.00385 * 233.58489 * 8 7 5 10 10 C 1.53040 * 109.38231 * 305.58650 * 9 8 7 11 11 C 1.50706 * 109.44739 * 181.25547 * 10 9 8 12 12 H 1.07998 * 119.99936 * 239.94065 * 11 10 9 13 13 C 1.37876 * 119.99898 * 59.93754 * 11 10 9 14 14 N 1.31514 * 120.00219 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99966 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46765 * 90.00440 * 15 13 11 17 17 H 1.48500 * 109.47437 * 209.99926 * 15 13 11 18 18 H 1.48495 * 109.47521 * 330.00818 * 15 13 11 19 19 C 1.53042 * 109.53768 * 61.24294 * 10 9 8 20 20 C 1.46929 * 120.62445 * 185.09789 * 7 5 4 21 21 H 1.08994 * 109.47497 * 60.00131 * 1 2 3 22 22 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.47112 * 300.00057 * 1 2 3 24 24 H 1.07998 * 119.99772 * 359.97438 * 4 3 2 25 25 H 1.08992 * 109.58942 * 353.41748 * 8 7 5 26 26 H 1.08998 * 109.58579 * 113.84821 * 8 7 5 27 27 H 1.08998 * 109.55898 * 185.55122 * 9 8 7 28 28 H 1.08998 * 109.39042 * 65.51423 * 9 8 7 29 29 H 1.09005 * 109.46328 * 301.22100 * 10 9 8 30 30 H 0.96998 * 120.00266 * 179.97438 * 14 13 11 31 31 H 1.09007 * 109.49277 * 178.68202 * 19 10 9 32 32 H 1.08995 * 109.52685 * 58.60210 * 19 10 9 33 33 H 1.09000 * 109.58742 * 246.15419 * 20 7 5 34 34 H 1.09001 * 109.59216 * 6.43642 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 3.2905 1.4288 -0.0005 5 6 3.8908 2.7771 0.0001 6 8 3.1802 3.7588 -0.0950 7 7 5.2268 2.9199 0.1059 8 6 6.1069 1.7435 0.1154 9 6 7.0027 1.8024 1.3515 10 6 7.7427 3.1417 1.3791 11 6 8.6501 3.1889 2.5814 12 1 8.5170 3.9573 3.3285 13 6 9.6502 2.2512 2.7275 14 7 9.8126 1.3157 1.8174 15 14 10.7754 2.3101 4.2174 16 1 10.1911 1.4935 5.3115 17 1 12.1087 1.7674 3.8526 18 1 10.9208 3.7160 4.6727 19 6 6.7286 4.2851 1.4604 20 6 5.8302 4.2547 0.2200 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8901 24 1 3.9253 0.5550 -0.0005 25 1 5.5038 0.8361 0.1459 26 1 6.7262 1.7432 -0.7816 27 1 7.7260 0.9877 1.3171 28 1 6.3896 1.7070 2.2476 29 1 8.3369 3.2472 0.4713 30 1 10.5164 0.6562 1.9200 31 1 7.2571 5.2376 1.5036 32 1 6.1176 4.1672 2.3552 33 1 6.4264 4.4633 -0.6683 34 1 5.0445 5.0039 0.3169 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809754718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:56 Heat of formation + Delta-G solvation = -17.093361 kcal Electronic energy + Delta-G solvation = -17143.340299 eV Core-core repulsion = 14271.544723 eV Total energy + Delta-G solvation = -2871.795576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83441 -37.65540 -36.88328 -33.73557 -33.52349 -31.32905 -30.21380 -27.21513 -26.29717 -24.29961 -22.74703 -22.00609 -19.76499 -18.31958 -17.96056 -16.76241 -16.19003 -15.74179 -15.48626 -14.93599 -14.73986 -14.55427 -13.54998 -13.21204 -12.90088 -12.74026 -12.51551 -12.48488 -11.88497 -11.69401 -11.38839 -10.97083 -10.69677 -10.47245 -10.43882 -10.16111 -9.84298 -9.77127 -9.46245 -9.24339 -8.96548 -8.42925 -8.13793 -6.07472 -4.13486 1.23867 2.24192 3.26201 3.33583 3.34657 3.37036 3.57743 4.38001 4.54581 5.07124 5.21446 5.21912 5.22681 5.43979 5.50428 5.73363 5.85805 5.89255 5.99670 6.07295 6.21059 6.35513 6.57662 6.77353 6.94449 7.04731 7.13801 7.23741 7.59833 7.73188 7.86137 7.98338 8.32052 8.35206 8.89929 9.52106 10.98183 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.035356 B = 0.005236 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.745247 B = 5346.220043 C = 5800.123954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.242 6.242 3 N -0.271 5.271 4 C 0.072 3.928 5 C 0.560 3.440 6 O -0.533 6.533 7 N -0.583 5.583 8 C 0.097 3.903 9 C -0.127 4.127 10 C 0.048 3.952 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.125 4.125 20 C 0.114 3.886 21 H 0.052 0.948 22 H 0.098 0.902 23 H 0.053 0.947 24 H 0.139 0.861 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 -2.561 -4.199 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.258 6.258 3 N -0.019 5.019 4 C -0.144 4.144 5 C 0.345 3.655 6 O -0.408 6.408 7 N -0.317 5.317 8 C -0.025 4.025 9 C -0.165 4.165 10 C 0.029 3.971 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.008 4.008 21 H 0.071 0.929 22 H 0.116 0.884 23 H 0.071 0.929 24 H 0.156 0.844 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.125 0.875 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.402 -1.930 -4.294 12.336 hybrid contribution 1.143 -0.792 0.868 1.639 sum -10.260 -2.722 -3.425 11.153 Atomic orbital electron populations 1.22767 0.78306 1.02604 1.01571 1.89873 1.22583 1.20230 1.93097 1.76762 1.13891 1.03880 1.07401 1.25755 0.92813 0.99316 0.96490 1.17542 0.82535 0.86830 0.78546 1.90777 1.60847 1.39542 1.49667 1.48085 1.04431 1.09503 1.69716 1.22164 0.92751 0.85636 1.01947 1.21991 0.97365 1.04177 0.92998 1.18653 0.91639 0.89102 0.97702 1.21199 1.13981 1.12930 1.06960 0.92640 1.24949 0.97258 0.95435 0.96257 1.69819 1.32811 1.16276 1.34193 0.86612 0.80130 0.78295 0.83080 1.20739 1.21246 1.19945 1.22037 0.97628 1.01233 0.95371 1.21803 0.96846 0.82443 0.99660 0.92915 0.88357 0.92871 0.84379 0.91235 0.91144 0.87473 0.94050 0.95233 0.92931 0.91773 0.92784 0.91562 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 11.47 101.05 1.16 1.60 16 2 O -0.24 -3.43 11.72 -11.47 -0.13 -3.57 16 3 N -0.27 -4.40 11.12 32.11 0.36 -4.05 16 4 C 0.07 1.11 10.37 -14.81 -0.15 0.96 16 5 C 0.56 9.88 7.69 -12.44 -0.10 9.78 16 6 O -0.53 -10.91 16.32 5.31 0.09 -10.82 16 7 N -0.58 -10.01 2.98 -174.24 -0.52 -10.53 16 8 C 0.10 1.60 6.32 -3.93 -0.02 1.58 16 9 C -0.13 -2.64 5.14 -26.83 -0.14 -2.78 16 10 C 0.05 1.08 2.07 -91.73 -0.19 0.89 16 11 C -0.51 -13.22 8.56 -34.44 -0.29 -13.51 16 12 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 14 N -0.89 -23.73 11.31 55.43 0.63 -23.10 16 15 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 20 C 0.11 1.97 6.42 -3.71 -0.02 1.94 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.14 1.78 5.88 -52.49 -0.31 1.47 16 25 H 0.07 0.96 5.30 -51.93 -0.28 0.69 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.11 2.49 6.03 -51.93 -0.31 2.18 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.40 7.03 -51.93 -0.37 1.03 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -29.42 286.51 -4.89 -34.31 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.61 Total: -1.35 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 0.00 Total: -0.58 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.46 Total: -37.68 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.05 Total: -14.39 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.42 -4.89 -34.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809754718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.215 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds