Wall clock time and date at job start Sun Mar 29 2020 22:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.01917 * 2 1 4 4 C 1.53880 * 110.03221 * 121.39057 * 2 1 3 5 5 C 1.54266 * 106.59752 * 119.28513 * 4 2 1 6 6 C 1.54887 * 104.20039 * 23.60875 * 5 4 2 7 7 C 1.54273 * 110.03193 * 238.60368 * 2 1 3 8 8 H 1.08990 * 110.48336 * 335.78663 * 7 2 1 9 9 O 1.45200 * 110.48233 * 98.42911 * 7 2 1 10 10 C 1.34229 * 116.99948 * 210.00213 * 9 7 2 11 11 O 1.20822 * 119.99723 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00385 * 180.02562 * 10 9 7 13 13 C 1.52993 * 109.47496 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47213 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99994 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99860 * 180.02562 * 14 13 12 17 17 N 1.31507 * 119.99917 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99787 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47178 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46790 * 120.00112 * 18 16 14 21 21 H 1.48500 * 109.47359 * 240.00028 * 18 16 14 22 22 H 1.09002 * 109.47153 * 60.70182 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.70372 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.70354 * 1 2 3 25 25 H 1.08995 * 109.47761 * 59.29792 * 3 2 1 26 26 H 1.09006 * 109.47629 * 179.30014 * 3 2 1 27 27 H 1.09007 * 109.47055 * 299.29370 * 3 2 1 28 28 H 1.08999 * 110.03126 * 238.56653 * 4 2 1 29 29 H 1.08999 * 110.02855 * 359.97438 * 4 2 1 30 30 H 1.08999 * 110.48398 * 142.29192 * 5 4 2 31 31 H 1.09004 * 110.48734 * 264.92648 * 5 4 2 32 32 H 1.09003 * 110.75575 * 80.36923 * 6 5 4 33 33 H 1.08994 * 110.75727 * 203.56281 * 6 5 4 34 34 H 1.09004 * 109.47145 * 300.00309 * 12 10 9 35 35 H 1.09005 * 109.46734 * 59.99305 * 12 10 9 36 36 H 1.08995 * 109.47308 * 300.00645 * 13 12 10 37 37 H 1.09004 * 109.46594 * 59.99918 * 13 12 10 38 38 H 0.97008 * 119.99798 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0571 -0.7530 1.2341 5 6 2.8874 -1.9403 0.7044 6 6 3.3137 -1.5012 -0.7184 7 6 2.0584 -0.7551 -1.2372 8 1 1.3142 -1.4653 -1.5972 9 8 2.4198 0.1803 -2.2873 10 6 2.2981 -0.2482 -3.5535 11 8 1.9032 -1.3680 -3.7769 12 6 2.6551 0.6669 -4.6964 13 6 2.4283 -0.0611 -6.0227 14 6 2.7847 0.8542 -7.1656 15 1 3.1382 1.8550 -6.9658 16 6 2.6596 0.4140 -8.4662 17 7 2.2287 -0.8045 -8.7094 18 14 3.1021 1.5484 -9.8828 19 1 3.5582 2.8558 -9.3462 20 1 4.1913 0.9362 -10.6855 21 1 1.9093 1.7548 -10.7430 22 1 -0.3633 0.5029 -0.8962 23 1 -0.3633 0.5247 0.8836 24 1 -0.3634 -1.0276 0.0126 25 1 1.6852 1.9586 0.8835 26 1 3.1437 1.4272 0.0126 27 1 1.7056 1.9510 -0.8963 28 1 2.6867 -0.0946 1.8325 29 1 1.2228 -1.1180 1.8332 30 1 3.7637 -2.1031 1.3320 31 1 2.2772 -2.8424 0.6585 32 1 4.1710 -0.8294 -0.6748 33 1 3.5356 -2.3685 -1.3401 34 1 2.0278 1.5575 -4.6584 35 1 3.7028 0.9568 -4.6159 36 1 3.0558 -0.9515 -6.0605 37 1 1.3807 -0.3514 -6.1033 38 1 2.1404 -1.1140 -9.6245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:38 Heat of formation + Delta-G solvation = -140.816013 kcal Electronic energy + Delta-G solvation = -17538.584759 eV Core-core repulsion = 14764.964509 eV Total energy + Delta-G solvation = -2773.620250 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.73074 -39.69747 -36.97265 -35.66051 -33.23009 -33.12650 -29.43420 -28.22969 -27.84338 -25.53141 -24.09850 -21.99323 -21.27600 -19.90153 -19.13257 -18.14066 -17.23902 -17.00983 -16.49808 -16.22559 -15.50729 -15.05724 -14.68677 -14.32337 -14.23580 -14.09011 -13.87045 -13.36687 -13.12541 -13.07168 -12.85847 -12.60239 -12.49071 -12.20602 -12.07532 -12.02995 -11.77412 -11.56217 -11.47967 -11.42590 -11.36817 -11.25904 -11.06774 -10.59975 -8.21177 -6.35254 1.25008 1.42773 1.43984 1.57501 1.76813 2.42650 3.12747 3.40399 3.51581 3.76162 3.87755 4.24856 4.28796 4.29186 4.34847 4.40139 4.42860 4.48573 4.63559 4.79474 4.81741 4.87586 4.91435 4.97779 5.07197 5.09470 5.12684 5.25530 5.29968 5.42733 5.44193 5.51547 5.52966 5.57160 5.79199 6.12012 6.80127 6.87864 7.35281 8.91883 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.048723 B = 0.004477 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.542665 B = 6252.083010 C = 6419.264415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.129 4.129 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.142 4.142 7 C 0.073 3.927 8 H 0.066 0.934 9 O -0.342 6.342 10 C 0.461 3.539 11 O -0.547 6.547 12 C -0.094 4.094 13 C 0.039 3.961 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.004 4.004 17 N -0.937 5.937 18 Si 0.975 3.025 19 H -0.253 1.253 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.114 0.886 35 H 0.114 0.886 36 H -0.012 1.012 37 H -0.012 1.012 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 3.707 21.606 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C -0.186 4.186 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.179 4.179 7 C 0.018 3.982 8 H 0.084 0.916 9 O -0.258 6.258 10 C 0.307 3.693 11 O -0.437 6.437 12 C -0.132 4.132 13 C 0.002 3.998 14 C -0.581 4.581 15 H 0.096 0.904 16 C -0.202 4.202 17 N -0.577 5.577 18 Si 0.799 3.201 19 H -0.176 1.176 20 H -0.206 1.206 21 H -0.205 1.205 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.327 3.259 21.465 21.714 hybrid contribution -0.074 -0.312 -1.322 1.360 sum 0.253 2.948 20.144 20.360 Atomic orbital electron populations 1.21969 0.93521 1.02060 1.02368 1.21348 0.96065 0.96810 0.92277 1.21708 1.01093 0.93847 1.01968 1.22272 1.00250 0.96502 0.95472 1.22255 1.00802 0.98396 0.93842 1.22907 0.97281 0.99592 0.98167 1.24019 0.97912 0.90564 0.85718 0.91610 1.86595 1.78474 1.45670 1.15091 1.24528 0.72851 0.87351 0.84607 1.90603 1.44366 1.23163 1.85593 1.21500 1.04868 0.97914 0.88872 1.18786 0.95293 0.94852 0.90883 1.21671 1.44583 1.00459 0.91434 0.90440 1.26111 0.94809 0.96774 1.02471 1.70171 1.47454 1.19056 1.20970 0.85248 0.77788 0.79030 0.78031 1.17648 1.20554 1.20546 0.94144 0.89832 0.92509 0.90695 0.92432 0.93413 0.89493 0.89680 0.89106 0.91248 0.89963 0.92799 0.86812 0.86768 0.99322 0.99350 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.15 71.98 0.59 -2.19 16 2 C -0.06 -1.34 0.92 -51.46 -0.05 -1.39 16 3 C -0.13 -2.52 7.57 71.98 0.54 -1.98 16 4 C -0.11 -1.62 6.11 31.32 0.19 -1.43 16 5 C -0.12 -1.97 6.83 31.67 0.22 -1.75 16 6 C -0.14 -3.48 6.63 31.91 0.21 -3.27 16 7 C 0.07 2.08 2.60 31.70 0.08 2.16 16 8 H 0.07 2.19 6.86 -2.39 -0.02 2.18 16 9 O -0.34 -11.48 8.35 -51.41 -0.43 -11.91 16 10 C 0.46 19.08 7.96 71.24 0.57 19.65 16 11 O -0.55 -26.82 15.19 21.98 0.33 -26.48 16 12 C -0.09 -3.94 5.75 29.85 0.17 -3.77 16 13 C 0.04 2.17 4.26 29.85 0.13 2.30 16 14 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 15 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 17 N -0.94 -58.94 13.29 21.45 0.28 -58.65 16 18 Si 0.98 44.08 29.54 68.60 2.03 46.11 16 19 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 23 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.05 1.10 7.49 -2.38 -0.02 1.08 16 28 H 0.09 1.07 7.67 -2.39 -0.02 1.05 16 29 H 0.08 1.04 7.67 -2.39 -0.02 1.03 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 4.24 8.14 -2.38 -0.02 4.23 16 35 H 0.11 4.26 8.14 -2.38 -0.02 4.24 16 36 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 37 H -0.01 -0.74 8.10 -2.38 -0.02 -0.76 16 38 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -70.68 310.55 6.57 -64.12 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.00 Total: 8.86 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 3.35 Total: -22.04 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.28 Total: -58.65 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.10 Total: -38.40 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.68 6.57 -64.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.700 kcal (2) G-P(sol) polarization free energy of solvation -70.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds