Wall clock time and date at job start Sun Mar 29 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99925 * 2 1 4 4 H 1.48500 * 109.46998 * 240.00101 * 3 2 1 5 5 H 1.48499 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47169 * 120.00255 * 3 2 1 7 7 C 1.37874 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47016 * 179.97438 * 10 9 7 12 12 O 1.20832 * 120.00207 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00120 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99968 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47173 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46817 * 65.00158 * 15 14 13 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 C 1.53000 * 109.47233 * 184.99964 * 15 14 13 21 21 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47115 * 59.99749 * 9 7 2 23 23 H 1.09001 * 109.46972 * 300.00199 * 9 7 2 24 24 H 1.08998 * 109.47181 * 60.00347 * 10 9 7 25 25 H 1.09001 * 109.46837 * 299.99943 * 10 9 7 26 26 H 1.09008 * 109.47080 * 60.00287 * 14 13 11 27 27 H 1.08997 * 109.47529 * 300.00176 * 14 13 11 28 28 H 1.09002 * 109.47070 * 305.00338 * 15 14 13 29 29 H 1.08996 * 109.47853 * 300.00202 * 16 15 14 30 30 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 31 31 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 33 33 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 34 34 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 35 35 H 1.08993 * 109.47194 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.46695 * 59.99734 * 19 18 17 37 37 H 1.08992 * 109.47399 * 300.00166 * 20 15 14 38 38 H 1.09004 * 109.46724 * 60.00652 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4918 -4.9671 0.0045 12 8 0.2835 -4.9672 0.0045 13 8 2.1629 -6.1296 0.0052 14 6 1.3721 -7.3473 0.0075 15 6 2.3041 -8.5607 0.0073 16 6 3.1001 -8.5926 1.3135 17 6 4.0316 -9.8063 1.3136 18 6 3.2020 -11.0860 1.1905 19 6 2.4060 -11.0541 -0.1157 20 6 1.4749 -9.8406 -0.1160 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5574 -0.8879 23 1 0.6247 -2.5562 0.8920 24 1 2.8719 -3.6035 0.8927 25 1 2.8719 -3.6050 -0.8873 26 1 0.7423 -7.3732 -0.8818 27 1 0.7442 -7.3711 0.8981 28 1 2.9916 -8.4906 -0.8356 29 1 3.6908 -7.6808 1.4014 30 1 2.4125 -8.6627 2.1563 31 1 4.5984 -9.8292 2.2444 32 1 4.7192 -9.7365 0.4707 33 1 2.5144 -11.1557 2.0334 34 1 3.8658 -11.9506 1.1902 35 1 1.8154 -11.9659 -0.2036 36 1 3.0937 -10.9844 -0.9586 37 1 0.7874 -9.9108 0.7268 38 1 0.9079 -9.8179 -1.0467 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:32 Heat of formation + Delta-G solvation = -135.334990 kcal Electronic energy + Delta-G solvation = -16937.150600 eV Core-core repulsion = 14163.768025 eV Total energy + Delta-G solvation = -2773.382575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.01265 -38.64673 -36.00062 -33.56298 -32.17197 -31.05223 -30.92185 -26.71982 -25.35854 -22.86033 -22.20261 -21.24669 -20.02720 -19.60830 -17.25608 -16.28856 -16.17821 -15.77168 -15.12564 -14.50786 -14.45831 -14.35346 -14.03333 -13.42048 -12.76366 -12.52159 -12.36750 -12.20217 -12.17943 -11.78807 -11.32577 -11.24322 -11.13640 -10.93234 -10.67253 -10.64153 -10.38096 -10.36348 -10.10477 -10.00849 -9.87955 -9.50582 -9.17550 -8.36439 -6.00342 -4.05332 2.87969 3.15693 3.33612 3.38204 3.40549 4.43648 4.46057 4.53245 4.57103 4.91646 5.03804 5.12565 5.24655 5.26809 5.32149 5.34869 5.42017 5.49350 5.52355 5.69840 5.75162 5.82977 5.93210 5.94824 5.98291 6.07360 6.14844 6.19767 6.25291 6.30004 6.69815 6.99760 7.67582 7.75187 7.99438 8.28536 8.45709 9.01715 9.58596 11.10674 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.061419 B = 0.003655 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.772409 B = 7658.770983 C = 7967.322235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.455 3.545 12 O -0.508 6.508 13 O -0.365 6.365 14 C 0.068 3.932 15 C -0.085 4.085 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.114 4.114 21 H 0.262 0.738 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 -21.077 1.040 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.299 3.701 12 O -0.395 6.395 13 O -0.283 6.283 14 C -0.006 4.006 15 C -0.104 4.104 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.151 4.151 21 H 0.072 0.928 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.179 -20.988 1.041 21.904 hybrid contribution 0.208 0.860 -0.011 0.885 sum 6.388 -20.128 1.030 21.142 Atomic orbital electron populations 1.69985 1.06102 1.26860 1.49880 1.25023 0.94859 0.99327 0.95125 0.86597 0.79506 0.82884 0.78642 1.20156 1.21259 1.20160 1.21128 0.93041 0.90685 1.51880 0.92358 1.19009 0.93239 0.89301 0.98862 1.21748 1.00639 0.87790 1.03916 1.24747 0.87914 0.85799 0.71638 1.90630 1.15969 1.87780 1.45070 1.86539 1.42085 1.14967 1.84722 1.22987 0.93462 0.81976 1.02218 1.21185 0.97254 0.92326 0.99590 1.21579 0.98427 0.98553 0.96699 1.21541 0.97887 0.94474 1.01787 1.21563 0.98789 0.97687 0.97824 1.21491 0.98331 0.97580 0.98028 1.21506 0.97837 0.93513 1.02275 0.92795 0.95616 0.95625 0.89035 0.89025 0.91648 0.91642 0.90105 0.90885 0.92061 0.92025 0.91947 0.92039 0.92227 0.91955 0.91888 0.91636 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.88 4.26 -27.88 -0.12 0.77 16 10 C -0.10 -2.16 5.75 -27.88 -0.16 -2.32 16 11 C 0.46 9.22 7.96 36.01 0.29 9.51 16 12 O -0.51 -11.89 15.73 -18.75 -0.30 -12.19 16 13 O -0.37 -6.15 9.76 -39.25 -0.38 -6.54 16 14 C 0.07 0.94 4.84 37.16 0.18 1.12 16 15 C -0.09 -0.91 2.44 -90.62 -0.22 -1.13 16 16 C -0.12 -1.18 5.10 -26.73 -0.14 -1.32 16 17 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 18 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 19 C -0.12 -0.88 5.92 -26.76 -0.16 -1.04 16 20 C -0.11 -1.00 5.20 -26.76 -0.14 -1.14 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 25 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 26 H 0.07 0.92 8.13 -51.92 -0.42 0.49 16 27 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -31.66 311.57 -8.17 -39.83 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.71 Total: -4.40 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -1.20 Total: -11.44 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.68 Total: -18.72 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.66 -8.17 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.501 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds