Wall clock time and date at job start Sun Mar 29 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46927 * 2 1 4 4 C 1.50697 * 109.46845 * 240.00038 * 2 1 3 5 5 H 1.07998 * 119.99846 * 239.99812 * 4 2 1 6 6 C 1.37881 * 119.99915 * 60.00356 * 4 2 1 7 7 N 1.31512 * 120.00247 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99894 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47338 * 89.99489 * 8 6 4 10 10 H 1.48495 * 109.47265 * 209.99807 * 8 6 4 11 11 H 1.48505 * 109.47176 * 329.99813 * 8 6 4 12 12 O 1.45201 * 109.47075 * 120.00068 * 2 1 3 13 13 C 1.34222 * 116.99867 * 269.99973 * 12 2 1 14 14 O 1.20830 * 120.00323 * 359.72425 * 13 12 2 15 15 C 1.50706 * 120.00024 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.47012 * 59.71777 * 15 13 12 17 17 C 1.52998 * 109.46708 * 299.72383 * 15 13 12 18 18 C 1.53006 * 109.47002 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.46924 * 59.99949 * 18 17 15 20 20 C 1.53001 * 109.47149 * 300.00180 * 19 18 17 21 21 C 1.52996 * 109.47350 * 60.00080 * 20 19 18 22 22 H 1.09002 * 109.47087 * 59.99590 * 21 20 19 23 23 C 1.52993 * 109.47460 * 179.97438 * 21 20 19 24 24 H 1.08996 * 109.47091 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47039 * 300.00258 * 1 2 3 26 26 H 1.09004 * 109.47048 * 59.99736 * 1 2 3 27 27 H 0.97003 * 120.00102 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47539 * 299.99802 * 17 15 13 29 29 H 1.09005 * 109.47120 * 60.00102 * 17 15 13 30 30 H 1.08996 * 109.46952 * 179.97438 * 18 17 15 31 31 H 1.09002 * 109.47088 * 300.00416 * 18 17 15 32 32 H 1.09006 * 109.47297 * 60.00173 * 19 18 17 33 33 H 1.09002 * 109.47205 * 180.02562 * 19 18 17 34 34 H 1.09005 * 109.46947 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.47054 * 299.99843 * 20 19 18 36 36 H 1.09002 * 109.47712 * 179.97438 * 23 21 20 37 37 H 1.08995 * 109.47426 * 300.00241 * 23 21 20 38 38 H 1.09002 * 109.47145 * 59.99821 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 8 2.0141 -0.6845 1.1856 13 6 2.2172 0.0640 2.2810 14 8 2.0026 1.2526 2.2490 15 6 2.7194 -0.5771 3.5492 16 1 3.6862 -1.0443 3.3619 17 6 1.7210 -1.6394 4.0135 18 6 2.2311 -2.2907 5.3006 19 6 2.3826 -1.2237 6.3867 20 6 3.3810 -0.1614 5.9222 21 6 2.8709 0.4899 4.6352 22 1 1.9041 0.9571 4.8229 23 6 3.8688 1.5526 4.1711 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7088 1.1614 -3.4844 28 1 0.7541 -1.1722 4.2008 29 1 1.6134 -2.3997 3.2399 30 1 1.5197 -3.0472 5.6317 31 1 3.1979 -2.7579 5.1130 32 1 1.4159 -0.7565 6.5744 33 1 2.7465 -1.6876 7.3035 34 1 3.4885 0.5990 6.6959 35 1 4.3476 -0.6286 5.7346 36 1 3.5057 2.0163 3.2539 37 1 3.9764 2.3126 4.9450 38 1 4.8358 1.0858 3.9836 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820063403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:03 Heat of formation + Delta-G solvation = -124.601074 kcal Electronic energy + Delta-G solvation = -18011.563679 eV Core-core repulsion = 15238.646561 eV Total energy + Delta-G solvation = -2772.917117 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.09494 -37.98213 -35.61783 -33.26135 -32.34746 -31.18233 -29.42358 -26.51658 -25.29570 -23.67798 -21.86794 -20.98225 -19.99025 -19.19346 -16.95891 -16.50207 -15.57457 -15.10739 -14.73616 -14.40048 -14.23088 -14.14206 -13.27709 -13.06739 -12.59454 -12.34401 -12.11890 -11.75777 -11.72128 -11.40396 -11.27190 -11.05802 -10.98520 -10.83192 -10.79606 -10.50409 -10.37377 -10.30862 -10.25157 -10.01543 -9.50012 -9.20516 -8.86493 -8.47022 -6.16803 -4.23558 3.06736 3.25423 3.30757 3.34665 3.73352 4.34788 4.68147 4.74350 4.88916 5.13986 5.16178 5.22994 5.42417 5.46703 5.51804 5.58197 5.69636 5.83124 5.94599 5.99238 6.06596 6.08712 6.13595 6.20452 6.28203 6.40216 6.54914 6.61896 6.72154 6.91092 6.95086 7.24368 7.62810 7.75941 7.98456 8.17743 8.69291 8.93651 9.42025 10.90609 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.039624 B = 0.005640 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.468978 B = 4963.494722 C = 5145.321923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.045 0.955 4 C -0.520 4.520 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 O -0.356 6.356 13 C 0.455 3.545 14 O -0.518 6.518 15 C -0.077 4.077 16 H 0.100 0.900 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.073 4.073 22 H 0.076 0.924 23 C -0.162 4.162 24 H 0.036 0.964 25 H 0.015 0.985 26 H 0.098 0.902 27 H 0.266 0.734 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 -3.951 14.836 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.558 4.558 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.272 6.272 13 C 0.298 3.702 14 O -0.409 6.409 15 C -0.096 4.096 16 H 0.118 0.882 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.091 4.091 22 H 0.094 0.906 23 C -0.219 4.219 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.980 -3.485 14.619 15.321 hybrid contribution 0.192 -0.252 -0.932 0.985 sum 3.172 -3.737 13.686 14.537 Atomic orbital electron populations 1.22150 0.97665 1.00006 1.01312 1.20600 0.91320 0.93890 0.77995 0.93673 1.21036 1.32396 1.13403 0.88970 0.91380 1.24888 0.94964 0.95086 0.99058 1.69902 1.36158 1.22577 1.24115 0.86283 0.79299 0.79138 0.81469 1.20367 1.20979 1.19643 1.86480 1.75664 1.43722 1.21349 1.23374 0.74761 0.85940 0.86086 1.90519 1.48677 1.16916 1.84779 1.21079 1.00943 0.97041 0.90572 0.88206 1.21501 0.97956 0.97592 0.97807 1.21535 1.01434 0.97638 0.94804 1.21581 0.99744 0.96683 0.97939 1.21612 0.98810 0.97905 0.96708 1.20953 1.00457 0.94657 0.93068 0.90600 1.22091 0.98199 0.98370 1.03197 0.94514 0.96607 0.88330 0.92440 0.91611 0.90278 0.91749 0.91745 0.91962 0.92148 0.91810 0.91890 0.89655 0.93155 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.33 37.16 0.35 -3.61 16 2 C 0.21 5.84 2.56 -27.88 -0.07 5.77 16 3 H 0.05 1.36 7.15 -51.93 -0.37 0.99 16 4 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 O -0.36 -8.58 9.77 -39.24 -0.38 -8.97 16 13 C 0.46 9.58 6.94 36.01 0.25 9.83 16 14 O -0.52 -12.11 12.88 -18.75 -0.24 -12.36 16 15 C -0.08 -1.19 2.16 -91.77 -0.20 -1.39 16 16 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 17 C -0.11 -1.49 5.14 -26.73 -0.14 -1.63 16 18 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 19 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 20 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 21 C -0.07 -1.00 1.89 -90.63 -0.17 -1.17 16 22 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 23 C -0.16 -2.33 8.87 37.15 0.33 -2.00 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.10 2.71 6.07 -51.93 -0.32 2.39 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.13 8.12 -51.93 -0.42 0.70 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.52 5.52 -51.93 -0.29 1.24 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -29.94 301.75 -7.41 -37.35 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.43 Total: -0.19 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -0.51 Total: -11.70 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.63 Total: -24.90 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.63 Total: -21.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.94 -7.41 -37.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820063403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.251 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds