Wall clock time and date at job start Sun Mar 29 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46927 * 2 1 4 4 C 1.50697 * 109.46845 * 240.00038 * 2 1 3 5 5 H 1.07998 * 119.99846 * 239.99812 * 4 2 1 6 6 C 1.37881 * 119.99915 * 60.00356 * 4 2 1 7 7 N 1.31512 * 120.00247 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99894 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47338 * 89.99489 * 8 6 4 10 10 H 1.48495 * 109.47265 * 209.99807 * 8 6 4 11 11 H 1.48505 * 109.47176 * 329.99813 * 8 6 4 12 12 O 1.45201 * 109.47075 * 120.00068 * 2 1 3 13 13 C 1.34222 * 116.99867 * 269.99973 * 12 2 1 14 14 O 1.20830 * 120.00323 * 359.72425 * 13 12 2 15 15 C 1.50706 * 120.00024 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.47012 * 59.71777 * 15 13 12 17 17 C 1.52998 * 109.46708 * 299.72383 * 15 13 12 18 18 C 1.53006 * 109.47002 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.46924 * 59.99949 * 18 17 15 20 20 C 1.53001 * 109.47149 * 300.00180 * 19 18 17 21 21 C 1.52996 * 109.47350 * 60.00080 * 20 19 18 22 22 H 1.09002 * 109.47087 * 59.99590 * 21 20 19 23 23 C 1.52993 * 109.47460 * 179.97438 * 21 20 19 24 24 H 1.08996 * 109.47091 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47039 * 300.00258 * 1 2 3 26 26 H 1.09004 * 109.47048 * 59.99736 * 1 2 3 27 27 H 0.97003 * 120.00102 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47539 * 299.99802 * 17 15 13 29 29 H 1.09005 * 109.47120 * 60.00102 * 17 15 13 30 30 H 1.08996 * 109.46952 * 179.97438 * 18 17 15 31 31 H 1.09002 * 109.47088 * 300.00416 * 18 17 15 32 32 H 1.09006 * 109.47297 * 60.00173 * 19 18 17 33 33 H 1.09002 * 109.47205 * 180.02562 * 19 18 17 34 34 H 1.09005 * 109.46947 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.47054 * 299.99843 * 20 19 18 36 36 H 1.09002 * 109.47712 * 179.97438 * 23 21 20 37 37 H 1.08995 * 109.47426 * 300.00241 * 23 21 20 38 38 H 1.09002 * 109.47145 * 59.99821 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 8 2.0141 -0.6845 1.1856 13 6 2.2172 0.0640 2.2810 14 8 2.0026 1.2526 2.2490 15 6 2.7194 -0.5771 3.5492 16 1 3.6862 -1.0443 3.3619 17 6 1.7210 -1.6394 4.0135 18 6 2.2311 -2.2907 5.3006 19 6 2.3826 -1.2237 6.3867 20 6 3.3810 -0.1614 5.9222 21 6 2.8709 0.4899 4.6352 22 1 1.9041 0.9571 4.8229 23 6 3.8688 1.5526 4.1711 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7088 1.1614 -3.4844 28 1 0.7541 -1.1722 4.2008 29 1 1.6134 -2.3997 3.2399 30 1 1.5197 -3.0472 5.6317 31 1 3.1979 -2.7579 5.1130 32 1 1.4159 -0.7565 6.5744 33 1 2.7465 -1.6876 7.3035 34 1 3.4885 0.5990 6.6959 35 1 4.3476 -0.6286 5.7346 36 1 3.5057 2.0163 3.2539 37 1 3.9764 2.3126 4.9450 38 1 4.8358 1.0858 3.9836 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820063403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:03 Heat of formation + Delta-G solvation = -140.358766 kcal Electronic energy + Delta-G solvation = -18012.246983 eV Core-core repulsion = 15238.646561 eV Total energy + Delta-G solvation = -2773.600422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.68480 -39.30984 -37.44252 -35.35296 -33.40037 -32.44574 -31.36721 -27.65344 -27.44637 -24.99184 -23.41721 -22.21670 -21.36909 -20.58011 -18.84021 -18.39816 -17.36830 -16.78014 -16.45695 -15.58822 -15.41970 -15.10413 -14.92806 -14.43560 -14.18525 -13.91593 -13.59188 -13.33679 -13.08448 -12.95807 -12.80530 -12.73807 -12.50087 -12.37532 -12.18005 -12.11849 -11.81844 -11.63827 -11.54510 -11.35713 -11.03734 -10.97241 -10.72664 -10.57271 -8.30050 -6.47316 1.36453 1.40921 1.43219 1.54391 2.05249 2.41851 3.00405 3.57839 3.70645 3.81543 4.15003 4.21927 4.30564 4.38515 4.48198 4.51547 4.55821 4.60457 4.75293 4.77485 4.81714 4.91618 4.97951 5.08331 5.13444 5.18435 5.24151 5.32277 5.34457 5.39921 5.44588 5.51805 5.59030 5.62695 5.92492 6.12963 6.58710 7.00826 7.25630 8.77740 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.039624 B = 0.005640 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.468978 B = 4963.494722 C = 5145.321923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.217 3.783 3 H 0.004 0.996 4 C -0.549 4.549 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.265 1.265 12 O -0.364 6.364 13 C 0.445 3.555 14 O -0.546 6.546 15 C -0.069 4.069 16 H 0.115 0.885 17 C -0.110 4.110 18 C -0.110 4.110 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.071 4.071 22 H 0.059 0.941 23 C -0.160 4.160 24 H 0.045 0.955 25 H 0.021 0.979 26 H 0.080 0.920 27 H 0.271 0.729 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.096 -5.660 16.110 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.163 3.837 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.191 1.191 10 H -0.202 1.202 11 H -0.189 1.189 12 O -0.280 6.280 13 C 0.290 3.710 14 O -0.438 6.438 15 C -0.088 4.088 16 H 0.133 0.867 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.158 4.158 20 C -0.143 4.143 21 C -0.089 4.089 22 H 0.078 0.922 23 C -0.218 4.218 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.931 -5.194 15.921 17.202 hybrid contribution -0.109 0.363 -1.286 1.341 sum 3.823 -4.831 14.635 15.879 Atomic orbital electron populations 1.21964 0.96875 1.00291 1.00643 1.20300 0.91940 0.91960 0.79459 0.97794 1.21300 1.33434 1.13874 0.90011 0.91512 1.25857 0.94689 0.95641 1.02206 1.70023 1.36635 1.23690 1.25226 0.85165 0.79033 0.78115 0.76995 1.19094 1.20234 1.18936 1.86478 1.76126 1.43892 1.21530 1.24668 0.73810 0.85821 0.86666 1.90515 1.49767 1.18330 1.85160 1.21291 1.01779 0.97962 0.87803 0.86671 1.21530 0.97136 0.96631 0.99433 1.21529 1.02283 0.97980 0.92962 1.21597 0.99468 0.96147 0.98556 1.21588 0.99417 0.98489 0.94804 1.20988 0.99710 0.94060 0.94156 0.92199 1.22043 0.98739 0.99117 1.01858 0.93574 0.96029 0.90133 0.91984 0.92494 0.91366 0.90144 0.90606 0.92282 0.89598 0.90261 0.90651 0.93827 0.91211 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.45 9.33 71.98 0.67 -6.78 16 2 C 0.22 12.30 2.56 29.85 0.08 12.37 16 3 H 0.00 0.27 7.15 -2.38 -0.02 0.25 16 4 C -0.55 -31.86 8.90 25.60 0.23 -31.63 16 5 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 8 Si 0.98 43.36 29.54 68.60 2.03 45.38 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 O -0.36 -18.12 9.77 -51.34 -0.50 -18.63 16 13 C 0.45 19.35 6.94 71.24 0.49 19.85 16 14 O -0.55 -26.88 12.88 21.95 0.28 -26.60 16 15 C -0.07 -2.11 2.16 -11.54 -0.02 -2.13 16 16 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 17 C -0.11 -2.83 5.14 30.60 0.16 -2.67 16 18 C -0.11 -1.94 5.92 30.60 0.18 -1.76 16 19 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 20 C -0.11 -1.88 5.20 30.59 0.16 -1.72 16 21 C -0.07 -1.86 1.89 -10.80 -0.02 -1.88 16 22 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 23 C -0.16 -4.55 8.87 71.98 0.64 -3.91 16 24 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 4.57 6.07 -2.39 -0.01 4.56 16 27 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.90 8.12 -2.38 -0.02 1.88 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 1.61 5.52 -2.39 -0.01 1.60 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -66.74 301.75 6.25 -60.49 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.01 Total: 13.38 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 3.19 Total: -20.64 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.24 Total: -53.38 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.22 Total: -45.22 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -66.74 6.25 -60.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820063403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.873 kcal (2) G-P(sol) polarization free energy of solvation -66.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds