Wall clock time and date at job start Sun Mar 29 2020 22:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46908 * 2 1 4 4 C 1.50703 * 109.47110 * 240.00148 * 2 1 3 5 5 H 1.07994 * 119.99948 * 240.00568 * 4 2 1 6 6 C 1.37875 * 119.99791 * 59.99849 * 4 2 1 7 7 N 1.31511 * 120.00200 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99750 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47230 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47090 * 120.00647 * 8 6 4 11 11 H 1.48505 * 109.47288 * 239.99939 * 8 6 4 12 12 O 1.45203 * 109.46890 * 120.00187 * 2 1 3 13 13 C 1.34224 * 117.00025 * 269.99964 * 12 2 1 14 14 O 1.20822 * 120.00139 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00059 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.47120 * 300.00103 * 15 13 12 17 17 C 1.53006 * 109.46989 * 59.99707 * 15 13 12 18 18 C 1.52997 * 109.46974 * 180.02562 * 17 15 13 19 19 C 1.53002 * 109.47092 * 300.00168 * 18 17 15 20 20 C 1.52996 * 109.46969 * 60.00060 * 19 18 17 21 21 C 1.52992 * 109.47224 * 299.99553 * 20 19 18 22 22 H 1.09002 * 109.47103 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47482 * 300.00294 * 21 20 19 24 24 H 1.08996 * 109.46920 * 299.99836 * 1 2 3 25 25 H 1.09000 * 109.47157 * 60.00000 * 1 2 3 26 26 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00695 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46866 * 60.00241 * 17 15 13 29 29 H 1.09001 * 109.47377 * 300.00390 * 17 15 13 30 30 H 1.09002 * 109.47045 * 180.02562 * 18 17 15 31 31 H 1.09000 * 109.47140 * 60.00393 * 18 17 15 32 32 H 1.09004 * 109.47059 * 299.99666 * 19 18 17 33 33 H 1.09004 * 109.46930 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.46997 * 179.97438 * 20 19 18 35 35 H 1.08996 * 109.47134 * 60.00388 * 20 19 18 36 36 H 1.09002 * 109.47153 * 59.99783 * 23 21 20 37 37 H 1.09001 * 109.46832 * 299.99974 * 23 21 20 38 38 H 1.09004 * 109.47261 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1856 -4.8161 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0639 2.2811 14 8 1.9974 1.2516 2.2507 15 6 2.7193 -0.5772 3.5492 16 1 2.0104 -1.3375 3.8773 17 6 4.0796 -1.2271 3.2880 18 6 4.5891 -1.8785 4.5752 19 6 4.7335 -0.8128 5.6635 20 6 3.3732 -0.1630 5.9246 21 6 2.8637 0.4884 4.6375 22 1 1.8948 0.9518 4.8236 23 6 3.8588 1.5556 4.1775 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7094 1.1620 -3.4843 28 1 4.7884 -0.4669 2.9599 29 1 3.9767 -1.9866 2.5129 30 1 5.5584 -2.3411 4.3893 31 1 3.8801 -2.6388 4.9029 32 1 5.4425 -0.0526 5.3358 33 1 5.0969 -1.2769 6.5805 34 1 3.4759 0.5959 6.7003 35 1 2.6643 -0.9233 6.2524 36 1 4.8280 1.0927 3.9914 37 1 3.9617 2.3148 4.9528 38 1 3.4961 2.0194 3.2601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820063405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:06 Heat of formation + Delta-G solvation = -136.230628 kcal Electronic energy + Delta-G solvation = -18103.378202 eV Core-core repulsion = 15329.956790 eV Total energy + Delta-G solvation = -2773.421413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75361 -39.51710 -37.44273 -35.35023 -32.76717 -32.46309 -31.35458 -28.04233 -27.46873 -25.01749 -23.42548 -22.89713 -21.31349 -19.55079 -18.77148 -18.35675 -17.41639 -17.02367 -16.57843 -15.88568 -15.33213 -15.05381 -14.81852 -14.34996 -14.08490 -13.87186 -13.72767 -13.51229 -13.18957 -12.97970 -12.81745 -12.56791 -12.47882 -12.33906 -12.14582 -12.11284 -11.87402 -11.60378 -11.55704 -11.10304 -11.02276 -10.91125 -10.75528 -10.57458 -8.30227 -6.47262 1.36809 1.40810 1.41631 1.55544 2.06041 2.41761 3.00341 3.58814 3.73060 3.82955 4.20630 4.22667 4.30800 4.36901 4.45437 4.51597 4.54037 4.65504 4.75443 4.81747 4.82444 4.91194 4.97810 5.10678 5.13040 5.22375 5.23145 5.28173 5.39144 5.41799 5.46741 5.50021 5.61894 5.67065 5.92734 6.13360 6.59102 7.01301 7.25767 8.77836 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.038656 B = 0.005885 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.172750 B = 4756.548590 C = 5114.926688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.004 0.996 4 C -0.547 4.547 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.263 1.263 10 H -0.271 1.271 11 H -0.275 1.275 12 O -0.364 6.364 13 C 0.445 3.555 14 O -0.546 6.546 15 C -0.069 4.069 16 H 0.119 0.881 17 C -0.111 4.111 18 C -0.109 4.109 19 C -0.122 4.122 20 C -0.105 4.105 21 C -0.072 4.072 22 H 0.062 0.938 23 C -0.160 4.160 24 H 0.022 0.978 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.271 0.729 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 -5.237 15.441 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.022 0.978 4 C -0.584 4.584 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.187 1.187 10 H -0.196 1.196 11 H -0.201 1.201 12 O -0.280 6.280 13 C 0.290 3.710 14 O -0.438 6.438 15 C -0.088 4.088 16 H 0.137 0.863 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.159 4.159 20 C -0.143 4.143 21 C -0.091 4.091 22 H 0.080 0.920 23 C -0.217 4.217 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.266 -4.777 15.254 17.169 hybrid contribution -0.230 0.351 -1.269 1.336 sum 6.036 -4.426 13.985 15.862 Atomic orbital electron populations 1.21975 0.96896 1.00335 1.00704 1.20300 0.91925 0.91952 0.79495 0.97822 1.21325 1.33295 1.13812 0.89984 0.91509 1.25855 0.94700 0.95665 1.02214 1.70028 1.36715 1.23722 1.25164 0.85123 0.78383 0.78421 0.77405 1.18666 1.19577 1.20086 1.86479 1.76110 1.43871 1.21578 1.24679 0.73680 0.85865 0.86774 1.90514 1.49733 1.18388 1.85134 1.21260 1.00015 0.99404 0.88138 0.86330 1.21551 0.93468 0.99874 1.00019 1.21516 1.01983 0.98091 0.93048 1.21627 0.97024 0.98128 0.99136 1.21551 0.97578 1.00278 0.94844 1.20957 0.99657 0.94303 0.94182 0.91951 1.22111 0.99180 0.98808 1.01600 0.95931 0.90131 0.93544 0.91997 0.92383 0.91684 0.90362 0.90540 0.91956 0.89757 0.90297 0.90576 0.91796 0.91522 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.52 9.33 71.98 0.67 -6.85 16 2 C 0.22 12.28 2.56 29.85 0.08 12.36 16 3 H 0.00 0.25 7.16 -2.39 -0.02 0.24 16 4 C -0.55 -31.72 8.90 25.60 0.23 -31.49 16 5 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 8 Si 0.98 43.39 29.54 68.60 2.03 45.41 16 9 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 O -0.36 -18.11 9.77 -51.36 -0.50 -18.61 16 13 C 0.44 19.29 6.94 71.24 0.49 19.78 16 14 O -0.55 -26.83 12.88 21.98 0.28 -26.54 16 15 C -0.07 -2.09 2.41 -11.54 -0.03 -2.12 16 16 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 17 C -0.11 -2.96 4.86 30.60 0.15 -2.81 16 18 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 19 C -0.12 -1.93 5.65 30.59 0.17 -1.76 16 20 C -0.11 -1.85 5.45 30.59 0.17 -1.68 16 21 C -0.07 -1.89 2.36 -10.80 -0.03 -1.92 16 22 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 23 C -0.16 -4.57 8.18 71.98 0.59 -3.98 16 24 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.08 4.58 6.07 -2.39 -0.01 4.56 16 26 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 27 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 28 H 0.06 1.66 6.43 -2.39 -0.02 1.64 16 29 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.06 6.43 -2.39 -0.02 1.05 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.66 4.81 -2.39 -0.01 1.65 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.53 5.52 -2.38 -0.01 1.52 16 Total: -1.00 -66.84 294.71 6.20 -60.64 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.03 Total: 13.47 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 3.12 Total: -20.94 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.24 Total: -53.42 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -0.22 Total: -45.16 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.84 6.20 -60.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820063405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.595 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds