Wall clock time and date at job start Sun Mar 29 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 110.01774 * 2 1 4 4 C 1.54271 * 110.03000 * 238.55405 * 2 1 3 5 5 C 1.55032 * 104.27664 * 264.23255 * 4 2 1 6 6 C 1.54889 * 102.68737 * 322.23545 * 5 4 2 7 7 H 1.09002 * 110.48377 * 279.03074 * 6 5 4 8 8 O 1.45202 * 110.48256 * 156.51687 * 6 5 4 9 9 C 1.34230 * 116.99836 * 93.24893 * 8 6 5 10 10 O 1.20833 * 119.99930 * 359.97438 * 9 8 6 11 11 C 1.50697 * 120.00262 * 180.27336 * 9 8 6 12 12 C 1.52996 * 109.47491 * 179.72204 * 11 9 8 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99802 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99548 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46838 * 90.00173 * 17 15 13 19 19 H 1.48500 * 109.46694 * 209.99659 * 17 15 13 20 20 H 1.48497 * 109.47261 * 329.99975 * 17 15 13 21 21 C 1.53881 * 110.03016 * 121.39093 * 2 1 3 22 22 H 1.08999 * 109.47145 * 298.61326 * 1 2 3 23 23 H 1.09005 * 109.46728 * 58.61502 * 1 2 3 24 24 H 1.09002 * 109.46863 * 178.61034 * 1 2 3 25 25 H 1.09006 * 109.46963 * 181.39570 * 3 2 1 26 26 H 1.09010 * 109.46879 * 301.38601 * 3 2 1 27 27 H 1.08998 * 109.47570 * 61.39033 * 3 2 1 28 28 H 1.08995 * 110.48854 * 23.00304 * 4 2 1 29 29 H 1.08997 * 110.48323 * 145.51725 * 4 2 1 30 30 H 1.09004 * 110.87516 * 203.89989 * 5 4 2 31 31 H 1.09006 * 110.70016 * 80.49279 * 5 4 2 32 32 H 1.09004 * 109.46801 * 299.72165 * 11 9 8 33 33 H 1.09000 * 109.47461 * 59.71633 * 11 9 8 34 34 H 1.09004 * 109.47066 * 299.99799 * 12 11 9 35 35 H 1.08994 * 109.47405 * 59.99969 * 12 11 9 36 36 H 0.96998 * 119.99342 * 179.97438 * 16 15 13 37 37 H 1.08999 * 110.03073 * 359.97438 * 21 2 1 38 38 H 1.09004 * 110.02871 * 238.57009 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7561 -1.2365 5 6 2.3312 -2.1918 -0.7190 6 6 2.8874 -1.9404 0.7045 7 1 3.9443 -1.6772 0.6602 8 8 2.6911 -3.1110 1.5409 9 6 3.7017 -3.9921 1.6028 10 8 4.7167 -3.7922 0.9784 11 6 3.5680 -5.2342 2.4456 12 6 4.8481 -6.0650 2.3364 13 6 4.7141 -7.3074 3.1788 14 1 3.8067 -7.4862 3.7367 15 6 5.7498 -8.2157 3.2373 16 7 6.8544 -7.9980 2.5576 17 14 5.5838 -9.7553 4.2821 18 1 5.0008 -10.8485 3.4634 19 1 6.9233 -10.1659 4.7745 20 1 4.6956 -9.4752 5.4387 21 6 2.0571 -0.7530 1.2341 22 1 -0.3633 0.4921 0.9021 23 1 -0.3633 0.5352 -0.8774 24 1 -0.3633 -1.0274 -0.0249 25 1 3.1435 1.4272 -0.0250 26 1 1.6752 1.9621 -0.8774 27 1 1.7158 1.9474 0.9021 28 1 1.3061 -0.7707 -2.0251 29 1 2.9798 -0.2995 -1.5979 30 1 3.0727 -2.6943 -1.3402 31 1 1.4070 -2.7682 -0.6764 32 1 3.4059 -4.9516 3.4859 33 1 2.7214 -5.8232 2.0930 34 1 5.0102 -6.3476 1.2962 35 1 5.6947 -5.4761 2.6891 36 1 7.5831 -8.6369 2.5991 37 1 1.2229 -1.1181 1.8332 38 1 2.6867 -0.0945 1.8326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820685473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:45 Heat of formation + Delta-G solvation = -125.677477 kcal Electronic energy + Delta-G solvation = -17188.959329 eV Core-core repulsion = 14415.995535 eV Total energy + Delta-G solvation = -2772.963794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22259 -38.66499 -35.82023 -33.56051 -31.81495 -30.99529 -28.77641 -27.52910 -26.05762 -24.37153 -22.43815 -20.68341 -19.74038 -18.93086 -17.43263 -16.33091 -15.79279 -15.55578 -15.07195 -14.54376 -14.39041 -13.94525 -13.57146 -13.23095 -13.10818 -12.70477 -12.27764 -12.17452 -11.80278 -11.73938 -11.60269 -11.19757 -11.01223 -10.94867 -10.74635 -10.65871 -10.64612 -10.52745 -10.11414 -10.01381 -9.84152 -9.50273 -9.16031 -8.36575 -6.00394 -4.05182 2.87943 3.17665 3.32387 3.38640 3.41875 4.33006 4.40394 4.45195 4.59351 5.03960 5.08322 5.15629 5.24340 5.30918 5.34975 5.37138 5.43876 5.55236 5.63627 5.69460 5.77212 5.80975 5.85639 5.95473 6.02997 6.11725 6.15055 6.17432 6.23951 6.26026 6.73583 7.03886 7.68042 7.75444 7.99569 8.29120 8.46908 9.02041 9.58763 11.10661 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.064750 B = 0.003902 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.329582 B = 7174.471737 C = 7314.168162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.113 4.113 5 C -0.140 4.140 6 C 0.080 3.920 7 H 0.087 0.913 8 O -0.359 6.359 9 C 0.455 3.545 10 O -0.507 6.507 11 C -0.104 4.104 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.113 4.113 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.207 16.516 -5.155 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.150 4.150 5 C -0.177 4.177 6 C 0.025 3.975 7 H 0.105 0.895 8 O -0.277 6.277 9 C 0.299 3.701 10 O -0.393 6.393 11 C -0.142 4.142 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.151 4.151 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.721 16.539 -5.395 20.977 hybrid contribution 0.131 -0.816 0.443 0.938 sum -11.591 15.723 -4.952 20.152 Atomic orbital electron populations 1.21914 0.94001 1.02025 1.01565 1.21122 0.95846 0.95194 0.94706 1.21933 1.01012 0.95093 1.01686 1.22442 1.01137 0.94622 0.96840 1.22903 1.01875 0.97437 0.95517 1.23517 1.00719 0.83900 0.89410 0.89483 1.86621 1.44724 1.32313 1.64086 1.24752 0.80475 0.84680 0.80203 1.90616 1.30300 1.75441 1.42970 1.21750 1.04683 0.89648 0.98069 1.19012 0.89730 0.93369 0.98313 1.21167 1.01496 1.05297 1.28681 0.92320 1.25026 0.95240 0.98335 0.95750 1.69997 1.05283 1.36244 1.41287 0.86540 0.77383 0.83194 0.80556 1.20606 1.21192 1.19782 1.22357 1.00213 0.94977 0.97522 0.92593 0.92701 0.92289 0.92446 0.92598 0.92569 0.91102 0.91202 0.90789 0.90428 0.89060 0.89047 0.95623 0.95614 0.92864 0.90050 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.14 37.16 0.30 -0.81 16 2 C -0.07 -0.63 0.94 -153.39 -0.14 -0.77 16 3 C -0.14 -1.10 8.16 37.15 0.30 -0.80 16 4 C -0.11 -1.10 5.91 -24.99 -0.15 -1.25 16 5 C -0.14 -1.76 6.64 -24.66 -0.16 -1.92 16 6 C 0.08 1.14 3.18 -25.08 -0.08 1.06 16 7 H 0.09 1.37 7.20 -51.93 -0.37 1.00 16 8 O -0.36 -6.18 9.95 -39.26 -0.39 -6.57 16 9 C 0.46 9.26 7.96 36.00 0.29 9.55 16 10 O -0.51 -11.82 15.22 -18.76 -0.29 -12.10 16 11 C -0.10 -2.18 5.75 -27.89 -0.16 -2.34 16 12 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 13 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 17 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.11 -1.26 5.88 -25.61 -0.15 -1.41 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.47 8.12 -51.93 -0.42 0.04 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.60 7.84 -51.93 -0.41 0.20 16 29 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.08 0.91 7.60 -51.93 -0.39 0.52 16 38 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -31.67 312.50 -7.32 -39.00 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.59 Total: -3.51 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.48 Total: -11.58 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.68 Total: -18.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.67 -7.32 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820685473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.681 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds