Wall clock time and date at job start Sun Mar 29 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 110.01774 * 2 1 4 4 C 1.54271 * 110.03000 * 238.55405 * 2 1 3 5 5 C 1.55032 * 104.27664 * 264.23255 * 4 2 1 6 6 C 1.54889 * 102.68737 * 322.23545 * 5 4 2 7 7 H 1.09002 * 110.48377 * 279.03074 * 6 5 4 8 8 O 1.45202 * 110.48256 * 156.51687 * 6 5 4 9 9 C 1.34230 * 116.99836 * 93.24893 * 8 6 5 10 10 O 1.20833 * 119.99930 * 359.97438 * 9 8 6 11 11 C 1.50697 * 120.00262 * 180.27336 * 9 8 6 12 12 C 1.52996 * 109.47491 * 179.72204 * 11 9 8 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99802 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99548 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46838 * 90.00173 * 17 15 13 19 19 H 1.48500 * 109.46694 * 209.99659 * 17 15 13 20 20 H 1.48497 * 109.47261 * 329.99975 * 17 15 13 21 21 C 1.53881 * 110.03016 * 121.39093 * 2 1 3 22 22 H 1.08999 * 109.47145 * 298.61326 * 1 2 3 23 23 H 1.09005 * 109.46728 * 58.61502 * 1 2 3 24 24 H 1.09002 * 109.46863 * 178.61034 * 1 2 3 25 25 H 1.09006 * 109.46963 * 181.39570 * 3 2 1 26 26 H 1.09010 * 109.46879 * 301.38601 * 3 2 1 27 27 H 1.08998 * 109.47570 * 61.39033 * 3 2 1 28 28 H 1.08995 * 110.48854 * 23.00304 * 4 2 1 29 29 H 1.08997 * 110.48323 * 145.51725 * 4 2 1 30 30 H 1.09004 * 110.87516 * 203.89989 * 5 4 2 31 31 H 1.09006 * 110.70016 * 80.49279 * 5 4 2 32 32 H 1.09004 * 109.46801 * 299.72165 * 11 9 8 33 33 H 1.09000 * 109.47461 * 59.71633 * 11 9 8 34 34 H 1.09004 * 109.47066 * 299.99799 * 12 11 9 35 35 H 1.08994 * 109.47405 * 59.99969 * 12 11 9 36 36 H 0.96998 * 119.99342 * 179.97438 * 16 15 13 37 37 H 1.08999 * 110.03073 * 359.97438 * 21 2 1 38 38 H 1.09004 * 110.02871 * 238.57009 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7561 -1.2365 5 6 2.3312 -2.1918 -0.7190 6 6 2.8874 -1.9404 0.7045 7 1 3.9443 -1.6772 0.6602 8 8 2.6911 -3.1110 1.5409 9 6 3.7017 -3.9921 1.6028 10 8 4.7167 -3.7922 0.9784 11 6 3.5680 -5.2342 2.4456 12 6 4.8481 -6.0650 2.3364 13 6 4.7141 -7.3074 3.1788 14 1 3.8067 -7.4862 3.7367 15 6 5.7498 -8.2157 3.2373 16 7 6.8544 -7.9980 2.5576 17 14 5.5838 -9.7553 4.2821 18 1 5.0008 -10.8485 3.4634 19 1 6.9233 -10.1659 4.7745 20 1 4.6956 -9.4752 5.4387 21 6 2.0571 -0.7530 1.2341 22 1 -0.3633 0.4921 0.9021 23 1 -0.3633 0.5352 -0.8774 24 1 -0.3633 -1.0274 -0.0249 25 1 3.1435 1.4272 -0.0250 26 1 1.6752 1.9621 -0.8774 27 1 1.7158 1.9474 0.9021 28 1 1.3061 -0.7707 -2.0251 29 1 2.9798 -0.2995 -1.5979 30 1 3.0727 -2.6943 -1.3402 31 1 1.4070 -2.7682 -0.6764 32 1 3.4059 -4.9516 3.4859 33 1 2.7214 -5.8232 2.0930 34 1 5.0102 -6.3476 1.2962 35 1 5.6947 -5.4761 2.6891 36 1 7.5831 -8.6369 2.5991 37 1 1.2229 -1.1181 1.8332 38 1 2.6867 -0.0945 1.8326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820685473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:45 Heat of formation + Delta-G solvation = -142.865818 kcal Electronic energy + Delta-G solvation = -17189.704671 eV Core-core repulsion = 14415.995535 eV Total energy + Delta-G solvation = -2773.709136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66050 -39.75572 -37.29405 -35.65783 -33.26813 -32.50210 -29.77728 -28.14394 -28.00642 -25.38722 -24.21839 -22.03136 -21.31297 -19.71949 -19.16948 -18.21582 -17.22417 -17.12293 -16.49750 -16.14585 -15.47823 -14.93245 -14.71961 -14.45078 -14.22724 -14.20836 -13.82147 -13.36033 -13.20734 -12.89515 -12.82898 -12.62782 -12.48802 -12.37850 -12.01793 -11.92297 -11.76116 -11.54648 -11.47653 -11.43768 -11.42148 -11.29718 -11.16593 -10.58635 -8.20740 -6.34879 1.23311 1.42918 1.45622 1.56634 1.74500 2.42936 3.12955 3.42979 3.50426 3.74391 3.88099 4.17930 4.20597 4.32976 4.37083 4.43256 4.43714 4.50779 4.58871 4.79186 4.82699 4.86930 4.93942 4.96720 5.01391 5.09264 5.13627 5.19581 5.36539 5.39498 5.44291 5.52970 5.53373 5.56583 5.79444 6.12205 6.79415 6.86635 7.35489 8.92042 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.064750 B = 0.003902 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.329582 B = 7174.471737 C = 7314.168162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.140 4.140 6 C 0.066 3.934 7 H 0.067 0.933 8 O -0.350 6.350 9 C 0.463 3.537 10 O -0.546 6.546 11 C -0.095 4.095 12 C 0.039 3.961 13 C -0.545 4.545 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.976 3.024 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.255 1.255 21 C -0.108 4.108 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.115 0.885 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.084 0.916 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.527 17.033 -4.429 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.144 4.144 5 C -0.178 4.178 6 C 0.012 3.988 7 H 0.086 0.914 8 O -0.267 6.267 9 C 0.308 3.692 10 O -0.435 6.435 11 C -0.132 4.132 12 C 0.001 3.999 13 C -0.583 4.583 14 H 0.096 0.904 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.179 1.179 21 C -0.145 4.145 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.084 17.081 -4.663 22.624 hybrid contribution 0.851 -0.904 0.171 1.253 sum -13.233 16.177 -4.492 21.377 Atomic orbital electron populations 1.21906 0.92759 1.01991 1.02671 1.21128 0.96769 0.95554 0.93012 1.21922 1.00672 0.94200 1.02776 1.22453 1.01899 0.92437 0.97632 1.22912 1.01268 0.99487 0.94132 1.23919 1.00604 0.83775 0.90518 0.91438 1.86581 1.43027 1.32718 1.64421 1.24526 0.80357 0.84916 0.79378 1.90609 1.31956 1.76376 1.44608 1.21516 1.02197 0.89663 0.99829 1.18793 0.91488 0.93847 0.95739 1.21647 1.02233 1.05647 1.28745 0.90418 1.26123 0.94699 1.02330 0.97091 1.70165 1.06411 1.37845 1.43173 0.85288 0.77583 0.78261 0.78926 1.19663 1.21117 1.17919 1.22413 0.99813 0.93658 0.98666 0.91852 0.91288 0.92914 0.93038 0.91257 0.91762 0.89268 0.91042 0.92652 0.90033 0.86690 0.86693 0.99286 0.99258 0.92729 0.89715 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.14 71.98 0.59 -1.21 16 2 C -0.06 -1.04 0.94 -51.46 -0.05 -1.08 16 3 C -0.14 -1.83 8.16 71.98 0.59 -1.24 16 4 C -0.11 -1.90 5.91 31.72 0.19 -1.71 16 5 C -0.14 -3.48 6.64 31.94 0.21 -3.27 16 6 C 0.07 1.90 3.18 31.67 0.10 2.00 16 7 H 0.07 2.20 7.20 -2.39 -0.02 2.19 16 8 O -0.35 -11.92 9.95 -51.41 -0.51 -12.43 16 9 C 0.46 19.15 7.96 71.23 0.57 19.71 16 10 O -0.55 -26.64 15.22 21.94 0.33 -26.31 16 11 C -0.09 -3.96 5.75 29.85 0.17 -3.78 16 12 C 0.04 2.14 4.26 29.85 0.13 2.27 16 13 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 14 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 15 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 16 N -0.94 -58.83 13.29 21.45 0.28 -58.55 16 17 Si 0.98 44.03 29.54 68.60 2.03 46.06 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 C -0.11 -2.25 5.88 31.32 0.18 -2.07 16 22 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.74 8.12 -2.38 -0.02 0.73 16 26 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 1.29 7.84 -2.39 -0.02 1.27 16 29 H 0.07 1.26 7.84 -2.39 -0.02 1.24 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.12 4.26 8.14 -2.38 -0.02 4.25 16 33 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 34 H -0.01 -0.70 8.10 -2.38 -0.02 -0.72 16 35 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.08 1.73 7.60 -2.39 -0.02 1.71 16 38 H 0.08 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -70.12 312.50 6.51 -63.61 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.00 Total: 8.46 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 3.37 Total: -20.85 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.28 Total: -58.55 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.18 Total: -38.74 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -70.12 6.51 -63.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820685473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.251 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds