Wall clock time and date at job start Sun Mar 29 2020 22:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47347 * 2 1 4 4 C 1.37092 * 120.00217 * 265.44292 * 3 2 1 5 5 H 1.08003 * 120.00352 * 146.22766 * 4 3 2 6 6 C 1.38952 * 120.00137 * 326.22300 * 4 3 2 7 7 N 1.31408 * 119.99945 * 337.32064 * 6 4 3 8 8 Si 1.86802 * 120.00154 * 157.31125 * 6 4 3 9 9 H 1.48505 * 109.46829 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46860 * 120.00263 * 8 6 4 11 11 H 1.48494 * 109.47384 * 240.00430 * 8 6 4 12 12 C 1.34773 * 119.99517 * 85.43793 * 3 2 1 13 13 O 1.21301 * 119.99867 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00410 * 0.02562 * 12 3 2 15 15 H 1.09005 * 109.99387 * 319.64060 * 14 12 3 16 16 C 1.54325 * 109.88396 * 80.73770 * 14 12 3 17 17 C 1.55153 * 102.94307 * 141.61398 * 16 14 12 18 18 C 1.54909 * 101.58018 * 324.49521 * 17 16 14 19 19 N 1.47020 * 109.88501 * 198.54684 * 14 12 3 20 20 C 1.34774 * 125.65002 * 61.37403 * 19 14 12 21 21 O 1.21285 * 120.00261 * 0.02562 * 20 19 14 22 22 H 1.08998 * 109.46861 * 299.99643 * 1 2 3 23 23 H 1.08999 * 109.47533 * 59.99849 * 1 2 3 24 24 H 1.09006 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46657 * 240.00148 * 2 1 3 26 26 H 1.08997 * 109.47514 * 120.00701 * 2 1 3 27 27 H 0.97003 * 120.00316 * 179.97438 * 7 6 4 28 28 H 1.09006 * 110.71657 * 259.97643 * 16 14 12 29 29 H 1.08999 * 110.71649 * 23.06359 * 16 14 12 30 30 H 1.08997 * 111.00570 * 82.57530 * 17 16 14 31 31 H 1.09004 * 110.99937 * 206.38438 * 17 16 14 32 32 H 1.08999 * 110.36677 * 278.16963 * 18 17 16 33 33 H 1.09004 * 110.36568 * 155.85353 * 18 17 16 34 34 H 1.08003 * 120.00197 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3358 1.9961 -1.1835 5 1 2.1676 3.0561 -1.3035 6 6 2.8742 1.2554 -2.2287 7 7 3.4869 0.1195 -1.9816 8 14 2.7267 1.8744 -3.9850 9 1 1.9979 3.1683 -3.9942 10 1 4.0833 2.0667 -4.5576 11 1 1.9820 0.8806 -4.7992 12 6 2.1555 2.0474 1.1635 13 8 2.5594 3.1912 1.1636 14 6 1.8069 1.3714 2.4645 15 1 0.9013 0.7767 2.3446 16 6 2.9732 0.4666 2.9148 17 6 2.9951 0.6677 4.4531 18 6 2.6053 2.1618 4.5770 19 7 1.6069 2.3807 3.5146 20 6 0.6699 3.3494 3.5049 21 8 -0.1000 3.4390 2.5720 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8624 -0.3977 -2.7113 28 1 2.7719 -0.5751 2.6648 29 1 3.9111 0.7949 2.4668 30 1 2.2581 0.0298 4.9410 31 1 3.9918 0.4885 4.8564 32 1 3.4769 2.7959 4.4151 33 1 2.1677 2.3598 5.5555 34 1 0.6045 4.0458 4.3278 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823541951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:51 Heat of formation + Delta-G solvation = -54.878012 kcal Electronic energy + Delta-G solvation = -18303.526611 eV Core-core repulsion = 15430.092569 eV Total energy + Delta-G solvation = -2873.434042 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89402 -37.82433 -36.58293 -34.81707 -32.06217 -31.22077 -29.40636 -29.14311 -25.04074 -24.00007 -22.30644 -21.26574 -20.78195 -18.41036 -17.02241 -16.75636 -16.46656 -15.37389 -14.96759 -14.31633 -13.86180 -13.83658 -13.71252 -13.11484 -12.82376 -12.57286 -12.41063 -12.01573 -11.87342 -11.66565 -11.21927 -11.06747 -10.91497 -10.84195 -10.67608 -10.26394 -10.23311 -9.96269 -9.46894 -8.89726 -8.72280 -7.92403 -7.40798 -6.27827 -3.86533 3.13301 3.19721 3.30096 3.38293 3.45071 3.97077 4.22634 4.68093 4.79351 4.93667 5.05681 5.10983 5.31674 5.51458 5.62563 5.64777 5.85572 5.88016 6.02750 6.07027 6.11844 6.31472 6.38387 6.42178 6.59486 6.64886 6.98058 7.32598 7.65962 7.90144 8.31949 8.53861 8.62654 9.27617 9.49950 10.10826 10.75686 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030909 B = 0.008241 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.660916 B = 3396.897178 C = 3596.634848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.439 5.439 4 C -0.299 4.299 5 H 0.090 0.910 6 C 0.034 3.966 7 N -0.871 5.871 8 Si 0.915 3.085 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.460 3.540 13 O -0.574 6.574 14 C 0.116 3.884 15 H 0.085 0.915 16 C -0.118 4.118 17 C -0.131 4.131 18 C 0.103 3.897 19 N -0.606 5.606 20 C 0.509 3.491 21 O -0.542 6.542 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.266 0.734 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -3.661 11.962 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.031 4.031 3 N -0.158 5.158 4 C -0.427 4.427 5 H 0.108 0.892 6 C -0.170 4.170 7 N -0.510 5.510 8 Si 0.742 3.258 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.206 1.206 12 C 0.247 3.753 13 O -0.457 6.457 14 C 0.008 3.992 15 H 0.103 0.897 16 C -0.156 4.156 17 C -0.169 4.169 18 C -0.020 4.020 19 N -0.343 5.343 20 C 0.279 3.721 21 O -0.416 6.416 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.734 -3.084 11.328 11.867 hybrid contribution 0.041 0.112 -0.844 0.853 sum -1.693 -2.972 10.484 11.027 Atomic orbital electron populations 1.22225 0.98232 1.00103 1.01839 1.21650 0.91812 0.85600 1.04021 1.43457 1.55886 1.11898 1.04604 1.19492 1.39515 0.95376 0.88313 0.89204 1.25295 0.94684 0.96583 1.00395 1.69924 1.33027 1.15585 1.32449 0.86050 0.78064 0.79190 0.82537 1.19217 1.20854 1.20598 1.20322 0.82318 0.88028 0.84621 1.90495 1.50092 1.18498 1.86570 1.21597 0.99175 0.89656 0.88750 0.89695 1.22568 0.98546 0.99576 0.94941 1.22772 1.02220 0.95440 0.96495 1.22272 0.92298 0.96868 0.90610 1.48771 1.32895 1.31665 1.20976 1.22074 0.79093 0.80877 0.90041 1.90727 1.41932 1.71182 1.37808 0.93749 0.92406 0.93208 0.86836 0.93477 0.92411 0.89613 0.89883 0.90638 0.89822 0.91238 0.90679 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 10.03 37.16 0.37 -2.92 16 2 C 0.09 2.10 5.32 -4.04 -0.02 2.08 16 3 N -0.44 -11.66 2.56 -114.81 -0.29 -11.95 16 4 C -0.30 -8.69 8.98 -14.93 -0.13 -8.82 16 5 H 0.09 2.80 7.70 -52.48 -0.40 2.40 16 6 C 0.03 0.91 4.92 -17.47 -0.09 0.83 16 7 N -0.87 -23.60 11.34 55.50 0.63 -22.97 16 8 Si 0.91 21.29 29.61 -169.99 -5.03 16.25 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 C 0.46 11.89 6.03 -10.99 -0.07 11.83 16 13 O -0.57 -17.04 15.94 5.54 0.09 -16.95 16 14 C 0.12 2.26 2.36 -68.11 -0.16 2.10 16 15 H 0.09 1.65 5.77 -51.93 -0.30 1.35 16 16 C -0.12 -1.84 5.81 -24.90 -0.14 -1.99 16 17 C -0.13 -1.46 7.08 -24.58 -0.17 -1.63 16 18 C 0.10 1.26 7.21 -2.53 -0.02 1.24 16 19 N -0.61 -10.50 2.76 -169.37 -0.47 -10.96 16 20 C 0.51 9.22 11.64 54.05 0.63 9.85 16 21 O -0.54 -12.79 16.96 5.55 0.09 -12.70 16 22 H 0.04 0.88 6.69 -51.93 -0.35 0.53 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.11 2.79 5.34 -51.93 -0.28 2.51 16 26 H 0.05 0.93 5.37 -51.93 -0.28 0.65 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 28 H 0.09 1.20 7.10 -51.93 -0.37 0.84 16 29 H 0.08 1.48 7.84 -51.93 -0.41 1.08 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -35.96 280.91 -5.03 -40.99 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.48 Total: 1.49 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 0.20 Total: 12.57 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.13 Total: -45.89 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: 0.18 Total: -29.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.96 -5.03 -40.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823541951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.883 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds