Wall clock time and date at job start Sun Mar 29 2020 22:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47347 * 2 1 4 4 C 1.37092 * 120.00217 * 265.44292 * 3 2 1 5 5 H 1.08003 * 120.00352 * 146.22766 * 4 3 2 6 6 C 1.38952 * 120.00137 * 326.22300 * 4 3 2 7 7 N 1.31408 * 119.99945 * 337.32064 * 6 4 3 8 8 Si 1.86802 * 120.00154 * 157.31125 * 6 4 3 9 9 H 1.48505 * 109.46829 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46860 * 120.00263 * 8 6 4 11 11 H 1.48494 * 109.47384 * 240.00430 * 8 6 4 12 12 C 1.34773 * 119.99517 * 85.43793 * 3 2 1 13 13 O 1.21301 * 119.99867 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00410 * 0.02562 * 12 3 2 15 15 H 1.09005 * 109.99387 * 319.64060 * 14 12 3 16 16 C 1.54325 * 109.88396 * 80.73770 * 14 12 3 17 17 C 1.55153 * 102.94307 * 141.61398 * 16 14 12 18 18 C 1.54909 * 101.58018 * 324.49521 * 17 16 14 19 19 N 1.47020 * 109.88501 * 198.54684 * 14 12 3 20 20 C 1.34774 * 125.65002 * 61.37403 * 19 14 12 21 21 O 1.21285 * 120.00261 * 0.02562 * 20 19 14 22 22 H 1.08998 * 109.46861 * 299.99643 * 1 2 3 23 23 H 1.08999 * 109.47533 * 59.99849 * 1 2 3 24 24 H 1.09006 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46657 * 240.00148 * 2 1 3 26 26 H 1.08997 * 109.47514 * 120.00701 * 2 1 3 27 27 H 0.97003 * 120.00316 * 179.97438 * 7 6 4 28 28 H 1.09006 * 110.71657 * 259.97643 * 16 14 12 29 29 H 1.08999 * 110.71649 * 23.06359 * 16 14 12 30 30 H 1.08997 * 111.00570 * 82.57530 * 17 16 14 31 31 H 1.09004 * 110.99937 * 206.38438 * 17 16 14 32 32 H 1.08999 * 110.36677 * 278.16963 * 18 17 16 33 33 H 1.09004 * 110.36568 * 155.85353 * 18 17 16 34 34 H 1.08003 * 120.00197 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3358 1.9961 -1.1835 5 1 2.1676 3.0561 -1.3035 6 6 2.8742 1.2554 -2.2287 7 7 3.4869 0.1195 -1.9816 8 14 2.7267 1.8744 -3.9850 9 1 1.9979 3.1683 -3.9942 10 1 4.0833 2.0667 -4.5576 11 1 1.9820 0.8806 -4.7992 12 6 2.1555 2.0474 1.1635 13 8 2.5594 3.1912 1.1636 14 6 1.8069 1.3714 2.4645 15 1 0.9013 0.7767 2.3446 16 6 2.9732 0.4666 2.9148 17 6 2.9951 0.6677 4.4531 18 6 2.6053 2.1618 4.5770 19 7 1.6069 2.3807 3.5146 20 6 0.6699 3.3494 3.5049 21 8 -0.1000 3.4390 2.5720 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8624 -0.3977 -2.7113 28 1 2.7719 -0.5751 2.6648 29 1 3.9111 0.7949 2.4668 30 1 2.2581 0.0298 4.9410 31 1 3.9918 0.4885 4.8564 32 1 3.4769 2.7959 4.4151 33 1 2.1677 2.3598 5.5555 34 1 0.6045 4.0458 4.3278 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823541951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:50 Heat of formation + Delta-G solvation = -81.367098 kcal Electronic energy + Delta-G solvation = -18304.675264 eV Core-core repulsion = 15430.092569 eV Total energy + Delta-G solvation = -2874.582695 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43792 -39.57986 -38.02684 -36.85286 -34.09083 -32.51829 -31.25370 -30.52559 -26.98087 -25.40332 -24.04240 -22.45437 -22.32897 -20.09017 -18.90406 -18.27503 -18.09792 -16.98393 -16.82145 -16.04308 -15.62354 -15.48963 -15.14062 -14.68774 -14.36609 -14.11871 -13.86678 -13.65466 -13.55362 -13.24939 -12.86808 -12.74399 -12.47705 -12.31891 -12.18287 -12.13178 -11.82256 -11.64899 -10.97709 -10.91901 -10.49106 -9.56398 -9.46604 -8.37249 -6.05508 1.31462 1.36711 1.50546 1.74104 2.01461 2.20730 2.32712 2.96615 3.12348 3.58101 3.69042 3.96319 4.05430 4.18546 4.25008 4.33052 4.55061 4.63782 4.74527 4.80265 4.86781 4.89160 5.01074 5.10038 5.23405 5.27435 5.36258 5.42668 5.53362 6.17486 6.50580 6.62823 7.15794 7.22869 7.47322 8.08180 8.64626 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030909 B = 0.008241 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.660916 B = 3396.897178 C = 3596.634848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 N -0.453 5.453 4 C -0.343 4.343 5 H 0.049 0.951 6 C 0.008 3.992 7 N -0.880 5.880 8 Si 0.977 3.023 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.259 1.259 12 C 0.443 3.557 13 O -0.629 6.629 14 C 0.119 3.881 15 H 0.087 0.913 16 C -0.118 4.118 17 C -0.113 4.113 18 C 0.095 3.905 19 N -0.609 5.609 20 C 0.500 3.500 21 O -0.609 6.609 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.276 0.724 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -5.468 13.761 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 N -0.172 5.172 4 C -0.471 4.471 5 H 0.067 0.933 6 C -0.195 4.195 7 N -0.518 5.518 8 Si 0.800 3.200 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.183 1.183 12 C 0.232 3.768 13 O -0.516 6.516 14 C 0.010 3.990 15 H 0.105 0.895 16 C -0.156 4.156 17 C -0.151 4.151 18 C -0.026 4.026 19 N -0.345 5.345 20 C 0.272 3.728 21 O -0.488 6.488 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.598 -4.956 13.169 14.161 hybrid contribution 0.072 0.672 -1.393 1.548 sum -1.526 -4.283 11.776 12.624 Atomic orbital electron populations 1.22118 0.96230 1.02371 1.00529 1.21767 0.93413 0.83556 1.04291 1.43747 1.55837 1.13254 1.04341 1.19280 1.42597 0.94338 0.90912 0.93300 1.25969 0.93455 0.96673 1.03395 1.69956 1.32074 1.15836 1.33928 0.85159 0.78382 0.78505 0.77942 1.20576 1.19805 1.18300 1.21478 0.81104 0.87609 0.86584 1.90431 1.52497 1.20909 1.87746 1.21545 1.00655 0.90331 0.86426 0.89503 1.22589 0.95200 0.99257 0.98559 1.22826 1.04801 0.94853 0.92578 1.22655 0.91180 0.97674 0.91129 1.49066 1.33340 1.30813 1.21230 1.23265 0.77973 0.81063 0.90471 1.90698 1.44658 1.72813 1.40621 0.94134 0.94625 0.88995 0.88724 0.90781 0.91436 0.87845 0.92942 0.87842 0.87021 0.92141 0.85785 0.79761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 10.03 71.98 0.72 -5.35 16 2 C 0.09 4.20 5.32 86.38 0.46 4.66 16 3 N -0.45 -25.04 2.56 -635.53 -1.62 -26.66 16 4 C -0.34 -21.01 8.98 84.04 0.75 -20.26 16 5 H 0.05 3.31 7.70 -2.91 -0.02 3.29 16 6 C 0.01 0.44 4.92 84.93 0.42 0.86 16 7 N -0.88 -47.85 11.34 21.66 0.25 -47.60 16 8 Si 0.98 44.35 29.61 68.60 2.03 46.38 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 12 C 0.44 23.85 6.03 87.66 0.53 24.38 16 13 O -0.63 -39.54 15.94 -3.10 -0.05 -39.59 16 14 C 0.12 4.60 2.36 44.59 0.11 4.71 16 15 H 0.09 3.31 5.77 -2.38 -0.01 3.30 16 16 C -0.12 -3.47 5.81 31.78 0.18 -3.28 16 17 C -0.11 -2.02 7.08 31.98 0.23 -1.79 16 18 C 0.09 1.98 7.21 86.86 0.63 2.61 16 19 N -0.61 -20.22 2.76 -808.16 -2.23 -22.45 16 20 C 0.50 17.65 11.64 129.79 1.51 19.16 16 21 O -0.61 -29.51 16.96 -3.04 -0.05 -29.56 16 22 H 0.04 1.61 6.69 -2.39 -0.02 1.59 16 23 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 25 H 0.09 4.66 5.34 -2.38 -0.01 4.65 16 26 H 0.07 2.87 5.37 -2.39 -0.01 2.86 16 27 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.10 2.63 7.10 -2.38 -0.02 2.61 16 29 H 0.05 1.87 7.84 -2.39 -0.02 1.85 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.19 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -85.53 280.91 4.96 -80.57 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.10 Total: 13.23 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 5.54 Total: 25.68 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -3.61 Total: -96.71 kcal Atomic # 8 Polarization: -69.05 SS G_CDS: -0.10 Total: -69.15 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -85.53 4.96 -80.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823541951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.793 kcal (2) G-P(sol) polarization free energy of solvation -85.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds