Wall clock time and date at job start Sun Mar 29 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46988 * 2 1 4 4 H 1.09004 * 110.01512 * 53.33516 * 3 2 1 5 5 C 1.54264 * 110.07520 * 291.91261 * 3 2 1 6 6 C 1.54896 * 104.19462 * 217.08442 * 5 3 2 7 7 C 1.54968 * 102.77811 * 37.91458 * 6 5 3 8 8 C 1.53881 * 110.03133 * 174.71732 * 3 2 1 9 9 H 1.08991 * 110.03588 * 238.67101 * 8 3 2 10 10 C 1.50703 * 110.02929 * 0.05464 * 8 3 2 11 11 O 1.20821 * 120.00185 * 86.29210 * 10 8 3 12 12 O 1.34229 * 119.99802 * 266.00994 * 10 8 3 13 13 C 1.45195 * 116.99793 * 180.27745 * 12 10 8 14 14 H 1.08999 * 109.47621 * 30.00304 * 13 12 10 15 15 C 1.53000 * 109.47144 * 270.00165 * 13 12 10 16 16 C 1.50709 * 109.46968 * 150.00665 * 13 12 10 17 17 H 1.07995 * 119.99364 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99968 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99740 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46910 * 90.00239 * 20 18 16 22 22 H 1.48502 * 109.47063 * 210.00124 * 20 18 16 23 23 H 1.48495 * 109.47291 * 330.00025 * 20 18 16 24 24 H 1.09002 * 109.47523 * 299.99701 * 1 2 3 25 25 H 1.09000 * 109.47246 * 60.00161 * 1 2 3 26 26 H 1.08998 * 109.47245 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47153 * 239.99905 * 2 1 3 28 28 H 1.09002 * 109.46848 * 120.00182 * 2 1 3 29 29 H 1.08995 * 110.48513 * 335.75824 * 5 3 2 30 30 H 1.08995 * 110.48401 * 98.40697 * 5 3 2 31 31 H 1.08999 * 110.75314 * 156.25847 * 6 5 3 32 32 H 1.09000 * 110.75019 * 279.44067 * 6 5 3 33 33 H 1.08992 * 110.52774 * 203.43590 * 7 6 5 34 34 H 1.08998 * 110.47339 * 80.76317 * 7 6 5 35 35 H 1.08993 * 109.47275 * 60.00504 * 15 13 12 36 36 H 1.09006 * 109.46891 * 180.02562 * 15 13 12 37 37 H 1.08997 * 109.47475 * 299.99967 * 15 13 12 38 38 H 0.96991 * 119.99422 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9981 0.8216 5 6 1.7066 2.1220 -1.3442 6 6 2.9363 3.0189 -1.6316 7 6 4.1187 2.1493 -1.1343 8 6 3.5729 1.4596 0.1331 9 1 3.8645 2.0227 1.0196 10 6 4.0991 0.0502 0.2211 11 8 4.3376 -0.5697 -0.7882 12 8 4.3083 -0.5144 1.4207 13 6 4.8221 -1.8724 1.4295 14 1 5.4362 -2.0344 0.5436 15 6 3.6535 -2.8599 1.4275 16 6 5.6576 -2.0854 2.6656 17 1 5.7894 -1.2804 3.3734 18 6 6.2535 -3.3078 2.8928 19 7 6.0924 -4.2882 2.0309 20 14 7.2895 -3.5715 4.4245 21 1 6.4263 -4.0667 5.5267 22 1 8.3498 -4.5712 4.1389 23 1 7.9161 -2.2864 4.8257 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5870 1.3757 -2.1296 30 1 0.8055 2.7281 -1.2521 31 1 3.0267 3.2200 -2.6991 32 1 2.8752 3.9502 -1.0684 33 1 4.9765 2.7751 -0.8887 34 1 4.3889 1.4076 -1.8859 35 1 3.0492 -2.7059 0.5335 36 1 4.0393 -3.8794 1.4345 37 1 3.0395 -2.6981 2.3134 38 1 6.5120 -5.1479 2.1906 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835162929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:39 Heat of formation + Delta-G solvation = -138.387272 kcal Electronic energy + Delta-G solvation = -18162.189179 eV Core-core repulsion = 15388.674247 eV Total energy + Delta-G solvation = -2773.514932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.77748 -39.16519 -37.33109 -35.34079 -34.10228 -31.89338 -30.32308 -28.52144 -27.49430 -24.57605 -23.73082 -22.19158 -21.47437 -20.17469 -18.68324 -18.41161 -17.26463 -17.07906 -16.41566 -16.33746 -15.43077 -15.27882 -14.73929 -14.32513 -14.15052 -13.89508 -13.54023 -13.23718 -13.17738 -12.91172 -12.81637 -12.56011 -12.39352 -12.25038 -12.17379 -11.89820 -11.83925 -11.60970 -11.57633 -11.50043 -11.34663 -11.06636 -10.98790 -10.61112 -8.30984 -6.48511 1.37720 1.40384 1.42570 1.53774 2.05640 2.41193 2.99318 3.48550 3.57479 3.73434 4.09804 4.17734 4.33649 4.37929 4.47548 4.52210 4.55212 4.65817 4.73827 4.74364 4.77775 4.81054 4.85313 5.02425 5.13248 5.13552 5.16701 5.22470 5.25125 5.35279 5.40926 5.46268 5.53295 5.60842 5.91061 6.10571 6.57725 7.01017 7.24776 8.76862 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.036595 B = 0.006138 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.951113 B = 4560.531985 C = 4900.118131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C -0.072 4.072 4 H 0.108 0.892 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.088 4.088 9 H 0.114 0.886 10 C 0.458 3.542 11 O -0.556 6.556 12 O -0.366 6.366 13 C 0.218 3.782 14 H 0.002 0.998 15 C -0.137 4.137 16 C -0.550 4.550 17 H 0.067 0.933 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.985 3.015 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.265 1.265 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.021 0.979 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 13.865 -3.570 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C -0.090 4.090 4 H 0.126 0.874 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.108 4.108 9 H 0.133 0.867 10 C 0.304 3.696 11 O -0.447 6.447 12 O -0.283 6.283 13 C 0.165 3.835 14 H 0.020 0.980 15 C -0.195 4.195 16 C -0.588 4.588 17 H 0.085 0.915 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.807 3.193 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.189 1.189 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.278 13.448 -3.872 16.790 hybrid contribution 0.896 -1.114 0.435 1.494 sum -8.382 12.334 -3.437 15.304 Atomic orbital electron populations 1.21684 0.92951 1.01803 1.03113 1.21863 0.98640 0.96704 1.00290 1.21822 0.90123 0.96035 1.01021 0.87425 1.22470 0.99370 0.98479 0.94755 1.22483 0.92250 0.97973 1.02050 1.22488 0.99889 0.98753 0.94531 1.22064 0.98256 0.87545 1.02908 0.86740 1.24360 0.73096 0.90857 0.81314 1.90540 1.50190 1.65968 1.38051 1.86501 1.75219 1.33538 1.33033 1.20273 0.92059 0.74277 0.96906 0.98001 1.21935 0.97134 1.02469 0.97918 1.21318 1.31559 0.99050 1.06825 0.91512 1.25875 0.97228 0.94665 1.00679 1.70027 1.44360 1.03906 1.37313 0.85157 0.77899 0.78323 0.77884 1.19057 1.20175 1.18908 0.91213 0.90844 0.93475 0.94189 0.94279 0.92531 0.88387 0.90031 0.88859 0.89865 0.92507 0.96037 0.90230 0.93752 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.77 71.98 0.70 -2.46 16 2 C -0.14 -4.23 4.12 30.59 0.13 -4.11 16 3 C -0.07 -1.78 2.92 -10.07 -0.03 -1.81 16 4 H 0.11 2.15 8.14 -2.38 -0.02 2.14 16 5 C -0.11 -2.18 5.55 31.67 0.18 -2.01 16 6 C -0.11 -1.96 6.91 31.92 0.22 -1.74 16 7 C -0.12 -3.10 6.32 31.70 0.20 -2.90 16 8 C -0.09 -2.70 3.40 -10.81 -0.04 -2.73 16 9 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 10 C 0.46 20.14 4.73 71.24 0.34 20.48 16 11 O -0.56 -27.95 14.25 21.98 0.31 -27.63 16 12 O -0.37 -18.49 9.42 -51.41 -0.48 -18.98 16 13 C 0.22 12.50 2.56 29.85 0.08 12.57 16 14 H 0.00 0.14 7.16 -2.39 -0.02 0.12 16 15 C -0.14 -7.34 9.33 71.98 0.67 -6.67 16 16 C -0.55 -32.22 8.90 25.60 0.23 -31.99 16 17 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 18 C 0.02 0.85 5.30 84.65 0.45 1.30 16 19 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 20 Si 0.98 43.61 29.54 68.60 2.03 45.63 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.38 7.52 -2.39 -0.02 1.36 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 1.45 7.12 -2.39 -0.02 1.43 16 28 H 0.04 1.46 6.88 -2.39 -0.02 1.44 16 29 H 0.06 1.25 7.76 -2.39 -0.02 1.23 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.82 6.89 -2.39 -0.02 1.81 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 4.56 6.07 -2.38 -0.01 4.54 16 37 H 0.04 2.23 8.14 -2.39 -0.02 2.22 16 38 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -68.95 302.58 6.23 -62.72 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.02 Total: 14.09 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 3.12 Total: -22.07 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.24 Total: -53.77 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.17 Total: -46.61 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.95 6.23 -62.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835162929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.670 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds