Wall clock time and date at job start Sun Mar 29 2020 22:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47187 * 2 1 4 4 H 1.08996 * 110.05540 * 53.28381 * 3 2 1 5 5 C 1.54269 * 110.03067 * 291.87008 * 3 2 1 6 6 C 1.54889 * 104.19402 * 217.10336 * 5 3 2 7 7 C 1.54897 * 102.74673 * 37.94435 * 6 5 3 8 8 C 1.53873 * 110.03546 * 174.70159 * 3 2 1 9 9 H 1.08993 * 110.03564 * 238.57347 * 8 3 2 10 10 C 1.50700 * 110.02768 * 359.95139 * 8 3 2 11 11 O 1.20824 * 120.00220 * 86.53058 * 10 8 3 12 12 O 1.34231 * 119.99795 * 266.52547 * 10 8 3 13 13 C 1.45204 * 116.99813 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47046 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.47092 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99759 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99805 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00407 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47061 * 89.99614 * 19 17 15 21 21 H 1.48493 * 109.47206 * 210.00025 * 19 17 15 22 22 H 1.48507 * 109.46771 * 329.99900 * 19 17 15 23 23 H 1.08998 * 109.47271 * 300.00060 * 1 2 3 24 24 H 1.09003 * 109.46690 * 60.00875 * 1 2 3 25 25 H 1.09003 * 109.47078 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47272 * 239.99382 * 2 1 3 27 27 H 1.09005 * 109.46454 * 119.99857 * 2 1 3 28 28 H 1.08997 * 110.48443 * 335.77979 * 5 3 2 29 29 H 1.08997 * 110.48479 * 98.29275 * 5 3 2 30 30 H 1.09005 * 110.75308 * 156.25098 * 6 5 3 31 31 H 1.08996 * 110.76024 * 279.62739 * 6 5 3 32 32 H 1.08999 * 110.48236 * 203.37892 * 7 6 5 33 33 H 1.09002 * 110.48753 * 80.73554 * 7 6 5 34 34 H 1.09001 * 109.47649 * 300.00399 * 13 12 10 35 35 H 1.08997 * 109.47218 * 60.00444 * 13 12 10 36 36 H 1.09002 * 109.47475 * 299.99908 * 14 13 12 37 37 H 1.08999 * 109.47204 * 60.00479 * 14 13 12 38 38 H 0.97001 * 119.99916 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5875 1.9989 0.8207 5 6 1.7072 2.1206 -1.3451 6 6 2.9369 3.0172 -1.6330 7 6 4.1180 2.1475 -1.1351 8 6 3.5729 1.4597 0.1335 9 1 3.8643 2.0244 1.0190 10 6 4.0989 0.0504 0.2243 11 8 4.3416 -0.5700 -0.7837 12 8 4.2978 -0.5157 1.4250 13 6 4.8068 -1.8756 1.4365 14 6 4.9673 -2.3478 2.8829 15 6 5.4961 -3.7590 2.8948 16 1 5.6972 -4.2682 1.9640 17 6 5.7233 -4.3999 4.0943 18 7 6.1843 -5.6316 4.1047 19 14 5.3748 -3.5194 5.7045 20 1 3.9716 -3.7780 6.1165 21 1 6.2990 -4.0209 6.7530 22 1 5.5767 -2.0592 5.5240 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.5877 1.3735 -2.1297 29 1 0.8047 2.7251 -1.2545 30 1 3.0277 3.2172 -2.7007 31 1 2.8774 3.9476 -1.0683 32 1 4.9762 2.7735 -0.8907 33 1 4.3879 1.4048 -1.8859 34 1 4.1071 -2.5299 0.9165 35 1 5.7739 -1.9058 0.9347 36 1 5.6669 -1.6936 3.4033 37 1 4.0000 -2.3177 3.3844 38 1 6.3437 -6.0826 4.9486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835264407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:29 Heat of formation + Delta-G solvation = -123.790912 kcal Electronic energy + Delta-G solvation = -17596.099368 eV Core-core repulsion = 14823.217382 eV Total energy + Delta-G solvation = -2772.881986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.62313 -38.14185 -35.97742 -33.31641 -33.22575 -30.88846 -29.57272 -27.73115 -25.29785 -23.04618 -22.19385 -20.70528 -20.62884 -19.09622 -17.39616 -16.64708 -16.29241 -15.88216 -15.57198 -14.56188 -14.39391 -14.21204 -13.61656 -13.30292 -13.09028 -12.63504 -12.48965 -12.15464 -11.75559 -11.51420 -11.36693 -11.28589 -11.19770 -10.96932 -10.83237 -10.73954 -10.65931 -10.48642 -10.38376 -9.94574 -9.78112 -9.67263 -9.34093 -8.62229 -6.12868 -4.13928 2.55874 3.15730 3.27720 3.35086 3.39688 4.31552 4.38647 4.39069 4.59254 5.01679 5.07813 5.19427 5.20761 5.24748 5.35714 5.37148 5.44123 5.49319 5.56247 5.69645 5.72706 5.88685 5.92282 5.98595 5.99506 6.02123 6.07458 6.20122 6.21478 6.31399 6.47184 6.84627 7.21105 7.23739 7.62966 8.20892 8.40102 8.88939 9.46855 10.99775 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.035556 B = 0.005093 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.302926 B = 5496.049805 C = 5717.996846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C -0.076 4.076 4 H 0.084 0.916 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.088 4.088 9 H 0.101 0.899 10 C 0.467 3.533 11 O -0.515 6.515 12 O -0.362 6.362 13 C 0.082 3.918 14 C -0.009 4.009 15 C -0.527 4.527 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.881 3.119 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.263 1.263 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.023 0.977 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 17.882 -8.436 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.094 4.094 4 H 0.102 0.898 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.107 4.107 9 H 0.119 0.881 10 C 0.310 3.690 11 O -0.404 6.404 12 O -0.279 6.279 13 C 0.009 3.991 14 C -0.047 4.047 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.708 3.292 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.188 1.188 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.319 17.491 -8.584 21.597 hybrid contribution -0.016 0.070 0.913 0.915 sum -9.335 17.561 -7.671 21.316 Atomic orbital electron populations 1.21725 0.95315 1.01793 1.01529 1.21920 0.96689 0.95698 1.03240 1.21736 0.91741 0.97128 0.98803 0.89770 1.22470 0.97857 0.98600 0.96641 1.22474 0.94437 0.97978 1.01063 1.22443 0.98025 0.98997 0.95984 1.21792 0.96786 0.90680 1.01482 0.88051 1.23330 0.74180 0.89431 0.82011 1.90610 1.48257 1.64383 1.37194 1.86516 1.75927 1.33182 1.32266 1.23347 0.98104 0.76206 1.01435 1.19619 0.97651 0.97207 0.90187 1.20852 1.44464 0.96195 0.94994 0.90682 1.24936 0.94227 0.94671 0.99150 1.69900 1.44954 1.11762 1.26935 0.86755 0.78513 0.80738 0.83230 1.20048 1.21154 1.18772 0.92743 0.92755 0.92635 0.91034 0.91094 0.91100 0.91362 0.91180 0.91319 0.91047 0.89500 0.91852 0.91811 0.95435 0.95869 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.77 37.16 0.36 -1.15 16 2 C -0.14 -1.76 4.12 -26.73 -0.11 -1.87 16 3 C -0.08 -0.82 2.93 -89.50 -0.26 -1.08 16 4 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.12 -1.07 5.55 -25.07 -0.14 -1.21 16 6 C -0.12 -1.03 6.91 -24.73 -0.17 -1.20 16 7 C -0.12 -1.27 6.31 -25.07 -0.16 -1.42 16 8 C -0.09 -1.10 3.40 -90.66 -0.31 -1.40 16 9 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 10 C 0.47 7.96 4.77 36.01 0.17 8.13 16 11 O -0.52 -9.99 14.79 -18.75 -0.28 -10.26 16 12 O -0.36 -7.00 9.75 -39.26 -0.38 -7.38 16 13 C 0.08 1.78 5.40 37.16 0.20 1.99 16 14 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 15 C -0.53 -15.13 9.66 -34.44 -0.33 -15.47 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 19 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.49 7.52 -51.93 -0.39 0.10 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.03 7.13 -51.93 -0.37 0.66 16 27 H 0.07 1.06 6.86 -51.93 -0.36 0.70 16 28 H 0.07 0.70 7.75 -51.93 -0.40 0.29 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.11 6.89 -51.93 -0.36 0.75 16 34 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 35 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 36 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 37 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -31.16 304.05 -7.40 -38.56 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.46 Total: -2.58 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.97 Total: -13.04 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.66 Total: -17.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.16 -7.40 -38.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835264407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.230 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds