Wall clock time and date at job start Sun Mar 29 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08996 * 110.01722 * 305.70155 * 3 2 1 5 5 C 1.54274 * 110.03291 * 67.08986 * 3 2 1 6 6 C 1.55016 * 104.13576 * 95.68448 * 5 3 2 7 7 C 1.54894 * 102.75300 * 37.95016 * 6 5 3 8 8 C 1.53879 * 110.03420 * 184.30567 * 3 2 1 9 9 H 1.09008 * 110.02584 * 0.05279 * 8 3 2 10 10 C 1.50700 * 110.02963 * 121.42854 * 8 3 2 11 11 O 1.20821 * 120.00144 * 0.02562 * 10 8 3 12 12 O 1.34225 * 119.99610 * 180.02562 * 10 8 3 13 13 C 1.45199 * 117.00113 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47601 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47452 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99778 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99673 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00166 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46667 * 90.00045 * 19 17 15 21 21 H 1.48492 * 109.47132 * 210.00173 * 19 17 15 22 22 H 1.48499 * 109.47136 * 330.00457 * 19 17 15 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 27 27 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 28 28 H 1.08996 * 110.48587 * 214.34923 * 5 3 2 29 29 H 1.09004 * 110.48376 * 336.99944 * 5 3 2 30 30 H 1.09004 * 110.76205 * 279.63172 * 6 5 3 31 31 H 1.08995 * 110.90465 * 156.33419 * 6 5 3 32 32 H 1.09000 * 110.48233 * 203.36366 * 7 6 5 33 33 H 1.08998 * 110.48197 * 80.72831 * 7 6 5 34 34 H 1.09006 * 109.47126 * 300.00398 * 13 12 10 35 35 H 1.09002 * 109.46753 * 59.99976 * 13 12 10 36 36 H 1.08998 * 109.47295 * 300.00604 * 14 13 12 37 37 H 1.09002 * 109.47160 * 60.00135 * 14 13 12 38 38 H 0.97000 * 119.99857 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6010 1.9934 -0.8317 5 6 1.6843 2.1288 1.3351 6 6 2.9613 1.9632 2.1980 7 6 4.0994 2.1541 1.1647 8 6 3.5749 1.4589 -0.1085 9 1 3.9563 0.4392 -0.1622 10 6 3.9977 2.2327 -1.3307 11 8 3.1633 2.7272 -2.0512 12 8 5.3012 2.3725 -1.6188 13 6 5.6352 3.1308 -2.8111 14 6 7.1556 3.1814 -2.9742 15 6 7.5022 3.9690 -4.2114 16 1 6.7167 4.3916 -4.8202 17 6 8.8222 4.1500 -4.5660 18 7 9.1247 4.8378 -5.6454 19 14 10.1810 3.4197 -3.5127 20 1 10.4982 2.0508 -3.9933 21 1 11.3937 4.2713 -3.6086 22 1 9.7313 3.3561 -2.0988 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.4660 3.1846 1.1749 29 1 0.8373 1.6302 1.8064 30 1 3.0032 0.9673 2.6391 31 1 3.0098 2.7292 2.9719 32 1 5.0144 1.6744 1.5121 33 1 4.2707 3.2142 0.9776 34 1 5.1923 2.6500 -3.6834 35 1 5.2455 4.1445 -2.7179 36 1 7.5988 3.6618 -2.1020 37 1 7.5449 2.1676 -3.0676 38 1 10.0534 4.9655 -5.8948 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835264408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:31 Heat of formation + Delta-G solvation = -124.216970 kcal Electronic energy + Delta-G solvation = -17284.336105 eV Core-core repulsion = 14511.435643 eV Total energy + Delta-G solvation = -2772.900461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47549 -38.31847 -36.03822 -33.38167 -33.13380 -30.87417 -29.56881 -27.72648 -25.33691 -23.54365 -21.89550 -20.68686 -20.31042 -19.18296 -17.55105 -16.80669 -16.19413 -16.01731 -15.55612 -14.86328 -14.21978 -13.92043 -13.64649 -13.39788 -13.11109 -12.87731 -12.52303 -12.04403 -11.85635 -11.63435 -11.46402 -11.25646 -11.13240 -10.95203 -10.89521 -10.68687 -10.63918 -10.59886 -10.34600 -9.95369 -9.78330 -9.68982 -9.34472 -8.62511 -6.13075 -4.14224 2.54595 3.13185 3.27686 3.34980 3.39529 4.27971 4.38466 4.41442 4.63239 4.98458 5.00535 5.08581 5.19447 5.20494 5.27443 5.41754 5.47152 5.48910 5.53741 5.65786 5.75299 5.81842 5.87743 5.94495 5.97937 5.99155 6.03429 6.14668 6.17961 6.34309 6.46235 6.83469 7.20521 7.22954 7.62601 8.17799 8.39825 8.88658 9.46543 10.99562 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.042950 B = 0.004500 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.760698 B = 6220.329388 C = 6522.866040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.092 4.092 4 H 0.098 0.902 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.112 4.112 8 C -0.085 4.085 9 H 0.107 0.893 10 C 0.460 3.540 11 O -0.514 6.514 12 O -0.360 6.360 13 C 0.081 3.919 14 C -0.009 4.009 15 C -0.528 4.528 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.882 3.118 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.263 1.263 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.579 -9.236 16.285 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.110 4.110 4 H 0.116 0.884 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.149 4.149 8 C -0.104 4.104 9 H 0.125 0.875 10 C 0.303 3.697 11 O -0.403 6.403 12 O -0.276 6.276 13 C 0.009 3.991 14 C -0.046 4.046 15 C -0.566 4.566 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.708 3.292 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.188 1.188 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.634 -8.996 15.914 22.805 hybrid contribution 0.827 -0.230 0.137 0.870 sum -12.807 -9.226 16.051 22.512 Atomic orbital electron populations 1.21816 0.95701 1.01423 1.02049 1.21596 0.96082 0.95701 1.01946 1.21898 0.92229 0.97151 0.99768 0.88377 1.22503 0.97796 1.00739 0.94823 1.22533 0.94424 1.01797 0.97347 1.22311 0.98736 1.01164 0.92738 1.21755 0.97040 1.00170 0.91426 0.87484 1.23502 0.81439 0.78430 0.86294 1.90600 1.52972 1.46438 1.50339 1.86490 1.25881 1.68301 1.46925 1.23371 0.99252 0.94003 0.82500 1.19617 0.88782 0.97903 0.98341 1.20854 0.93784 1.33936 1.07986 0.90676 1.24939 0.98622 0.94552 0.94905 1.69899 1.18871 1.40199 1.24565 0.86744 0.81405 0.79345 0.81676 1.20047 1.21157 1.18767 0.92558 0.92879 0.92529 0.91873 0.91894 0.91455 0.91004 0.91243 0.91246 0.90280 0.90929 0.91807 0.91785 0.95409 0.95843 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.74 37.16 0.36 -0.88 16 2 C -0.12 -1.06 5.12 -26.73 -0.14 -1.19 16 3 C -0.09 -1.01 2.53 -89.50 -0.23 -1.24 16 4 H 0.10 1.32 6.40 -51.93 -0.33 0.99 16 5 C -0.12 -1.11 6.22 -25.00 -0.16 -1.27 16 6 C -0.12 -1.05 6.91 -24.67 -0.17 -1.22 16 7 C -0.11 -1.21 6.34 -25.07 -0.16 -1.37 16 8 C -0.08 -1.05 3.06 -90.66 -0.28 -1.33 16 9 H 0.11 1.17 7.67 -51.92 -0.40 0.77 16 10 C 0.46 7.91 7.10 36.01 0.26 8.17 16 11 O -0.51 -10.13 14.96 -18.75 -0.28 -10.41 16 12 O -0.36 -6.97 10.20 -39.25 -0.40 -7.37 16 13 C 0.08 1.78 5.40 37.16 0.20 1.98 16 14 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 15 C -0.53 -15.17 9.66 -34.44 -0.33 -15.50 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 19 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.41 6.50 -51.93 -0.34 0.08 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.56 6.22 -51.93 -0.32 0.23 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 34 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 35 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 36 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 37 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -31.29 306.43 -7.20 -38.49 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -6.38 Total: -3.24 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.86 Total: -12.19 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.68 Total: -17.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.29 -7.20 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835264408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.730 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds