Wall clock time and date at job start Sun Mar 29 2020 22:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46999 * 2 1 4 4 C 1.53003 * 109.46783 * 119.99919 * 2 1 3 5 5 C 1.52997 * 109.47143 * 65.00047 * 4 2 1 6 6 H 1.08999 * 115.54879 * 29.33175 * 5 4 2 7 7 C 1.53069 * 117.53386 * 243.61305 * 5 4 2 8 8 C 1.53000 * 59.98584 * 252.53081 * 7 5 4 9 9 H 1.09002 * 117.49833 * 107.50105 * 8 7 5 10 10 C 1.50697 * 117.50034 * 252.49893 * 8 7 5 11 11 O 1.20826 * 120.00094 * 68.74827 * 10 8 7 12 12 O 1.34225 * 120.00155 * 248.74712 * 10 8 7 13 13 C 1.45200 * 117.00401 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.47336 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.47043 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99690 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99780 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99846 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99691 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47344 * 60.00356 * 19 17 15 21 21 H 1.48506 * 109.46710 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47147 * 299.99870 * 19 17 15 23 23 H 1.08994 * 109.47019 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47665 * 300.00078 * 1 2 3 25 25 H 1.09000 * 109.46877 * 60.00071 * 1 2 3 26 26 H 1.09001 * 109.47237 * 239.99915 * 2 1 3 27 27 H 1.09006 * 109.47087 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47248 * 299.99702 * 3 2 1 29 29 H 1.09001 * 109.47195 * 59.99889 * 3 2 1 30 30 H 1.08997 * 109.46940 * 305.00304 * 4 2 1 31 31 H 1.08999 * 109.46929 * 184.99850 * 4 2 1 32 32 H 1.09008 * 117.49334 * 145.04636 * 7 5 4 33 33 H 1.08999 * 117.51639 * 0.02562 * 7 5 4 34 34 H 1.09002 * 109.46742 * 299.99412 * 13 12 10 35 35 H 1.08997 * 109.47649 * 59.99484 * 13 12 10 36 36 H 1.09002 * 109.46555 * 299.99318 * 14 13 12 37 37 H 1.08997 * 109.47343 * 59.99088 * 14 13 12 38 38 H 0.97004 * 119.99979 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1880 6 1 1.5392 -2.6154 0.1868 7 6 0.6786 -2.7120 2.2657 8 6 2.1538 -3.1170 2.2938 9 1 2.7830 -2.6730 3.0652 10 6 2.4932 -4.5356 1.9151 11 8 2.3537 -4.9061 0.7736 12 8 2.9506 -5.3876 2.8460 13 6 3.2578 -6.7380 2.4097 14 6 3.7612 -7.5566 3.6003 15 6 4.0794 -8.9583 3.1475 16 1 3.9364 -9.2375 2.1141 17 6 4.5531 -9.8843 4.0526 18 7 4.7267 -9.5444 5.3111 19 14 4.9468 -11.6220 3.4915 20 1 5.9960 -11.5774 2.4416 21 1 5.4356 -12.4164 4.6471 22 1 3.7212 -12.2537 2.9401 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6444 1.2952 32 1 -0.0463 -3.4715 1.9729 33 1 0.3371 -2.0014 3.0184 34 1 2.3586 -7.2022 2.0044 35 1 4.0282 -6.7047 1.6394 36 1 4.6603 -7.0925 4.0059 37 1 2.9905 -7.5899 4.3703 38 1 5.0596 -10.1959 5.9480 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835265360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:32 Heat of formation + Delta-G solvation = -99.522941 kcal Electronic energy + Delta-G solvation = -16568.368502 eV Core-core repulsion = 13796.538854 eV Total energy + Delta-G solvation = -2771.829648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.18806 -38.13131 -36.09898 -35.02856 -33.32935 -30.31247 -27.94397 -27.38312 -25.58734 -23.94873 -21.50882 -20.87736 -20.26062 -19.86273 -17.48145 -16.35868 -15.92657 -15.86796 -15.37863 -14.65008 -14.52581 -14.19770 -13.63668 -13.30553 -13.00236 -12.58031 -12.35675 -12.33502 -12.04661 -11.72681 -11.42357 -11.21369 -11.15380 -11.03345 -10.87757 -10.72942 -10.69759 -10.35773 -10.16725 -10.12210 -9.62520 -9.57557 -9.30161 -8.43629 -6.09770 -4.14284 2.44919 3.10811 3.30475 3.34349 3.38095 3.72566 4.37341 4.44385 4.58064 4.67436 4.79168 4.83291 5.02261 5.26602 5.26994 5.31987 5.39873 5.45566 5.47721 5.58189 5.60467 5.67911 5.80556 5.88106 5.94489 6.06437 6.09514 6.10451 6.12230 6.21274 6.64873 7.02559 7.56830 7.63350 7.87656 8.21278 8.30256 8.91077 9.49980 11.01769 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.069516 B = 0.003306 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.689525 B = 8468.227801 C = 8548.263596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.086 4.086 5 C -0.117 4.117 6 H 0.118 0.882 7 C -0.146 4.146 8 C -0.165 4.165 9 H 0.133 0.867 10 C 0.484 3.516 11 O -0.520 6.520 12 O -0.353 6.353 13 C 0.075 3.925 14 C 0.025 3.975 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.258 19.772 -7.070 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.123 4.123 5 C -0.135 4.135 6 H 0.136 0.864 7 C -0.183 4.183 8 C -0.184 4.184 9 H 0.151 0.849 10 C 0.328 3.672 11 O -0.410 6.410 12 O -0.269 6.269 13 C 0.002 3.998 14 C -0.012 4.012 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.220 19.537 -7.207 22.041 hybrid contribution 0.324 -1.185 -0.240 1.251 sum -6.897 18.353 -7.448 20.973 Atomic orbital electron populations 1.21856 0.95104 1.02135 1.01373 1.21112 0.96105 0.95925 0.98234 1.21846 1.01005 0.96004 1.01670 1.21301 1.01095 0.91657 0.98269 1.22533 1.01344 0.94085 0.95528 0.86377 1.23167 0.90408 1.03106 1.01570 1.21851 1.00510 0.90969 1.05079 0.84933 1.22474 0.73772 0.87378 0.83598 1.90610 1.50454 1.78496 1.21449 1.86512 1.74490 1.24858 1.41039 1.23649 0.99614 0.75705 1.00799 1.19164 0.97274 0.92995 0.91789 1.20951 1.44934 0.94963 0.95707 0.92312 1.24983 0.95253 0.99102 0.94804 1.69965 1.45271 1.35174 1.02468 0.86524 0.78869 0.83710 0.78147 1.20052 1.21102 1.20061 0.92188 0.92801 0.93064 0.90997 0.92676 0.92754 0.92731 0.91357 0.91151 0.88168 0.87434 0.92378 0.92331 0.95351 0.95351 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.01 37.16 0.33 -0.74 16 2 C -0.10 -0.74 2.88 -90.62 -0.26 -1.00 16 3 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 4 C -0.09 -0.72 4.97 -26.73 -0.13 -0.86 16 5 C -0.12 -1.26 4.24 -90.58 -0.38 -1.65 16 6 H 0.12 1.45 7.60 -51.93 -0.39 1.06 16 7 C -0.15 -1.54 9.88 -26.70 -0.26 -1.80 16 8 C -0.17 -2.17 6.02 -91.77 -0.55 -2.72 16 9 H 0.13 1.54 8.14 -51.93 -0.42 1.11 16 10 C 0.48 8.87 7.74 36.00 0.28 9.15 16 11 O -0.52 -10.68 16.01 -18.75 -0.30 -10.98 16 12 O -0.35 -7.40 10.22 -39.25 -0.40 -7.81 16 13 C 0.07 1.73 5.40 37.16 0.20 1.93 16 14 C 0.02 0.67 5.35 -27.88 -0.15 0.52 16 15 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.06 0.48 7.38 -51.93 -0.38 0.09 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 33 H 0.11 0.89 8.04 -51.93 -0.42 0.47 16 34 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 322.41 15.07 4.86 4.86 Total: -1.00 -31.20 322.41 -7.77 -38.96 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.64 Total: -4.12 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.00 Total: -11.57 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.70 Total: -18.78 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.20 -7.77 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.561 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds